CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03412
EES18676
KXG22343
KXG33384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	EES03412	AT2G33860.1	24485461
AT2G33860.1	EES18676	AT2G33860.1	24485461
AT2G33860.1	KXG22343	AT2G33860.1	24485461
AT2G33860.1	KXG33384	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053166_P001	Maize	nucleus	19.08	95.27
Zm00001d039006_P007	Maize	nucleus	90.26	86.85
Os05t0563400-01	Rice	nucleus	74.29	77.11
TraesCS1D01G404400.1	Wheat	nucleus	71.85	72.24
TraesCS1B01G424700.1	Wheat	nucleus	72.53	72.24
TraesCS1A01G396400.1	Wheat	nucleus	70.91	71.29
EES03412	Sorghum	nucleus	59.68	62.82
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	69.55	60.12
Zm00001d006004_P001	Maize	nucleus	23.27	51.04
CDY17209	Canola	nucleus	40.46	49.67
Bra005465.1-P	Field mustard	nucleus	40.6	49.59
CDY27929	Canola	nucleus	40.32	49.01
CDY37679	Canola	nucleus	39.38	48.99
Bra021885.1-P	Field mustard	nucleus	36.54	48.91
AT2G33860.1	Thale cress	nucleus	40.05	48.68
KRH50128	Soybean	nucleus	44.93	46.83
GSMUA_Achr4P10590_001	Banana	nucleus	44.65	46.22
KRH20373	Soybean	nucleus	44.52	46.08
KRH21341	Soybean	nucleus	45.2	45.38
GSMUA_Achr4P02750_001	Banana	nucleus	43.57	44.85
VIT_10s0003g00420.t01	Wine grape	nucleus	47.23	44.8
KXG22343	Sorghum	nucleus	40.87	44.67
GSMUA_Achr7P25330_001	Banana	nucleus	43.44	44.15
KXG33384	Sorghum	nucleus	40.73	43.94
PGSC0003DMT400081282	Potato	nucleus	43.17	42.65
GSMUA_Achr3P31350_001	Banana	nucleus	45.33	42.24
Solyc02g077560.2.1	Tomato	nucleus	42.49	42.03
EER94066	Sorghum	nucleus	24.76	26.56
EER88840	Sorghum	nucleus	24.76	25.81
EES05458	Sorghum	nucleus	24.63	25.71
EES13156	Sorghum	nucleus	17.59	25.1
KXG26729	Sorghum	nucleus, plastid	24.09	24.65
KXG36152	Sorghum	nucleus	21.65	24.13

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	EntrezGene:8074594	InterPro:Auxin_resp	InterPro:B3_DNA-bd
UniProt:C5YVJ4	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES18676	ProteinID:EES18676	ProteinID:EES18676.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PANTHER:PTHR31384	PANTHER:PTHR31384:SF31	SMART:SM01019	EnsemblPlantsGene:SORBI_3009G231800	SUPFAM:SSF101936	unigene:Sbi.12623
UniParc:UPI0001A88E3C	RefSeq:XP_002440246.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:57188679..57194389

Molecular Weight (calculated)

80858.5 Da

IEP (calculated)

7.666

GRAVY (calculated)

-0.478

Length

739 amino acids

Sequence
(BLAST)

001: MAGIDLNDTV EEDEEEAEPG NPACSQQSRT SSAATPPPPP LTPLLQPRPG AAVCLELWHA CAGPVAPLPR KGTVVVYLPQ GHLEHLGDAA AAAAGGAPAP
101: AALPPHVFCR VVDVTLHADA STDEVYAQLA LVAENEDVAR RLRGGSEDGS AGDGDDGEAV KQRFSRMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL
201: DYSQQRPSQE LVAKDLHGTE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG DDGELRLGVR RAAQLKNGSA FPALYNQCSN LGSLANVAHA
301: VATKSVFHIY YNPRLSQSEF IIPYSKFMKS FSQQFSAGLR FKMRYESDDA SERRCTGVIA GIGDADPMWR GSKWKCLMVR WDDDVDFRRP NRISPWEIEL
401: TSSVSGSHLS APNAKRLKPC LPPDYLVPNG SGCPDFAESA QFHKVLQGQE LLGYRTRDNA AVATSQPCEA RNMQYIDERS CSNNVSNSIP GVPRIGVRTP
501: LGNPRFSYHC SGFGESPRFQ KVLQGQEVFQ PYRGTLVDPS LRNSGFHQQD GSHVPTQANK WHPQLHGCAF RGTQAPAIPS QSSSPPSVLM FQRDNPKMSP
601: FEFGHCHMDK NEDMRAMFGH AGGIGRTEQT MMLQAHNVSG GMGNRDVTVE KFQPTVAVGR DGSDNREVTK NSCKIFGISL TEKVPAIKEK DCGDTNYPSP
701: FLSLKQHVPK SLGNSCATIH EQRPVVGRVI DVSTVDMMI

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.