Factsheet for Solyc02g077560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g077560.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	Solyc02g077560.2.1	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081282	Potato	nucleus	95.72	95.59
Zm00001d053166_P001	Maize	nucleus	14.32	72.3
VIT_10s0003g00420.t01	Wine grape	nucleus	58.23	55.84
KRH50128	Soybean	nucleus	50.47	53.17
KRH21341	Soybean	nucleus	52.34	53.12
KRH20373	Soybean	nucleus	50.33	52.66
CDY17209	Canola	nucleus	42.03	52.16
AT2G33860.1	Thale cress	nucleus	42.44	52.14
Bra005465.1-P	Field mustard	nucleus	41.9	51.74
CDY37679	Canola	nucleus	41.1	51.68
Bra021885.1-P	Field mustard	nucleus	38.02	51.45
CDY27929	Canola	nucleus	41.5	50.99
GSMUA_Achr10P...	Banana	nucleus	38.29	49.74
GSMUA_Achr7P11000_001	Banana	nucleus	36.14	45.15
TraesCS3A01G246000.1	Wheat	nucleus	40.03	44.89
Os01t0670800-02	Rice	nucleus	42.97	44.71
Os05t0563400-01	Rice	nucleus	41.77	43.82
EES03412	Sorghum	nucleus	41.1	43.73
GSMUA_Achr4P10590_001	Banana	nucleus	41.37	43.28
Zm00001d043922_P001	Maize	nucleus	40.83	43.08
TraesCS3B01G273400.2	Wheat	nucleus	40.56	42.92
TraesCS3B01G327000.1	Wheat	nucleus	37.62	42.58
EES18676	Sorghum	nucleus	42.03	42.49
GSMUA_Achr4P02750_001	Banana	nucleus	40.83	42.48
TraesCS1B01G424700.1	Wheat	nucleus	42.17	42.45
TraesCS3A01G292400.1	Wheat	nucleus	36.81	42.11
TraesCS1D01G404400.1	Wheat	nucleus	41.23	41.9
TraesCS1B01G347900.2	Wheat	nucleus	39.09	41.83
GSMUA_Achr7P25330_001	Banana	nucleus	40.43	41.54
TraesCS1D01G337400.1	Wheat	nucleus	38.69	41.4
TraesCS1A01G334900.1	Wheat	nucleus	39.09	41.3
TraesCS1A01G396400.1	Wheat	nucleus	40.56	41.22
TraesCS3D01G292100.1	Wheat	plastid	38.02	40.98
KXG22343	Sorghum	nucleus	37.08	40.98
TraesCS3D01G245400.2	Wheat	nucleus	40.96	40.96
HORVU1Hr1G076690.6	Barley	nucleus	37.88	40.6
Zm00001d038698_P001	Maize	nucleus	36.95	40.59
HORVU3Hr1G072340.2	Barley	nucleus	36.81	40.56
KXG33384	Sorghum	nucleus	37.08	40.44
Os01t0753500-01	Rice	plastid	39.22	40.08
Zm00001d043431_P012	Maize	nucleus	37.08	40.03
Zm00001d012731_P010	Maize	nucleus	36.95	40.0
Zm00001d039006_P007	Maize	nucleus	41.1	39.97
GSMUA_Achr3P31350_001	Banana	nucleus	41.37	38.97
Os05t0515400-01	Rice	nucleus	32.13	38.59
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	41.63	36.37
Zm00001d006004_P001	Maize	nucleus	16.2	35.91
Solyc11g013480.1.1	Tomato	nucleus	14.99	32.75
Solyc09g007810.2.1	Tomato	nucleus	25.57	27.52
Solyc11g069500.1.1	Tomato	nucleus	25.7	27.47
Solyc06g075150.2.1	Tomato	nucleus	24.63	27.42
Solyc10g086130.1.1	Tomato	nucleus	20.75	24.56
Solyc05g056040.2.1	Tomato	nucleus	20.48	23.54
Solyc11g013470.1.1	Tomato	cytosol, nucleus, vacuole	7.9	17.4

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010050	GO:GO:0010158	GO:GO:0010582	GO:GO:0030154	InterPro:IPR003340
InterPro:IPR015300	UniProt:K4B8Y1	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF5	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc02g077560.2	EnsemblPlants:Solyc02g077560.2.1	UniParc:UPI0002767D05
SEG:seg	:	:	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4B8Y1]

Coordinates

chr2:+:42460284..42466816

Molecular Weight (calculated)

81467.2 Da

IEP (calculated)

7.388

GRAVY (calculated)

-0.369

Length

747 amino acids

Sequence
(BLAST)

001: MMCGLIDLNT VDNDDAGEET TAPVSLDSPA SSSAASGSSD LTSSTTPAVA SVCMELWHAC AGPLISLPKK GSAVVYLPQG HLEHLSEYPS IACNLPPHVF
101: CRVVDVKLQA DAATDEVYAQ VSLVPDNQQI EQKWKDGDID ADIEEEEIEG AGKSITPHMF CKTLTASDTS THGGFSVPRR AAEDCFAPLD YRQQRPSQEL
201: VAKDLHGIEW KFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRTG DGELRLGVRR AAQAKTCSSY LAPCSKPLNV SGIVDAVNVI SSRNAFNICY
301: NPRDSSSDFI VPYHKFSKTL AHPFSAGMRF KMRVETEDAA EQRFTGLVVG VSNVDPVRWP GSKWRCLLVR WDDLDVSRHN RVSPWEIEPS GSAPVPSSLV
401: MPSAKRTRVG FPISKADFPI PREGIAVSDF GEPSRFQKVL QGQEILRMHA PYGGLDARSP RPAGTRCFPG FPSSGISRMG NSIRPLFGDT DKSHESIGFS
501: ESLRFNKVLQ GQEIFTSPPY GRAQAGIQMQ EKSRTGIFVG IQVPNHGNRW PAPNQDNNTP CKPINPVSAS SPPSALNFQH PSPPASKFQA MFNHKHDLVN
601: QASLDLSENC CRYPYLSSGS HTEDISQKEG TQGISSFGFL KEQKQTGLSY LSLGTQSSFK GNQNLVSTCK TGCRIFGFPL TESKISATRA DTPSEAVYSH
701: GLETTFLPSS DGKLQPGPPL MTNVVGTNFT KVNDLYAARD VLLDIAL

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.