Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005465.1-P | Field mustard | nucleus | 98.67 | 98.18 |
| CDY27929 | Canola | nucleus | 97.67 | 96.71 |
| CDY37679 | Canola | nucleus | 85.22 | 86.36 |
| AT2G33860.1 | Thale cress | nucleus | 87.04 | 86.18 |
| Zm00001d053166_P001 | Maize | nucleus | 18.77 | 76.35 |
| CDX81024 | Canola | cytosol | 5.65 | 49.28 |
| GSMUA_Achr10P... | Banana | nucleus | 45.02 | 47.13 |
| KRH20373 | Soybean | nucleus | 54.65 | 46.08 |
| VIT_10s0003g00420.t01 | Wine grape | nucleus | 59.47 | 45.96 |
| KRH50128 | Soybean | nucleus | 53.49 | 45.42 |
| KRH21341 | Soybean | nucleus | 54.15 | 44.29 |
| GSMUA_Achr7P11000_001 | Banana | nucleus | 43.02 | 43.31 |
| CDX83839 | Canola | mitochondrion | 7.48 | 42.86 |
| PGSC0003DMT400081282 | Potato | nucleus | 52.49 | 42.25 |
| Solyc02g077560.2.1 | Tomato | nucleus | 52.16 | 42.03 |
| TraesCS3A01G246000.1 | Wheat | nucleus | 45.51 | 41.14 |
| Os05t0563400-01 | Rice | nucleus | 48.34 | 40.87 |
| Os01t0670800-02 | Rice | nucleus | 48.67 | 40.81 |
| EES18676 | Sorghum | nucleus | 49.67 | 40.46 |
| TraesCS3A01G292400.1 | Wheat | nucleus | 43.69 | 40.28 |
| GSMUA_Achr4P02750_001 | Banana | nucleus | 48.01 | 40.25 |
| TraesCS1D01G404400.1 | Wheat | nucleus | 49.0 | 40.14 |
| GSMUA_Achr4P10590_001 | Banana | nucleus | 47.51 | 40.06 |
| TraesCS1B01G424700.1 | Wheat | nucleus | 49.17 | 39.89 |
| EES03412 | Sorghum | nucleus | 46.18 | 39.6 |
| TraesCS1A01G396400.1 | Wheat | nucleus | 48.17 | 39.46 |
| TraesCS3B01G327000.1 | Wheat | nucleus | 43.19 | 39.39 |
| Zm00001d043922_P001 | Maize | nucleus | 45.85 | 38.98 |
| GSMUA_Achr7P25330_001 | Banana | nucleus | 46.84 | 38.79 |
| TraesCS3B01G273400.2 | Wheat | nucleus | 45.35 | 38.67 |
| Zm00001d006004_P001 | Maize | nucleus | 21.59 | 38.58 |
| Zm00001d039006_P007 | Maize | nucleus | 49.17 | 38.54 |
| TraesCS3D01G292100.1 | Wheat | plastid | 44.35 | 38.53 |
| HORVU3Hr1G072340.2 | Barley | nucleus | 42.86 | 38.05 |
| Zm00001d043431_P012 | Maize | nucleus | 43.19 | 37.57 |
| HORVU1Hr1G076690.6 | Barley | nucleus | 43.36 | 37.45 |
| Zm00001d012731_P010 | Maize | nucleus | 42.86 | 37.39 |
| KXG33384 | Sorghum | nucleus | 42.52 | 37.37 |
| TraesCS1D01G337400.1 | Wheat | nucleus | 42.86 | 36.96 |
| TraesCS3D01G245400.2 | Wheat | nucleus | 45.51 | 36.68 |
| TraesCS1A01G334900.1 | Wheat | nucleus | 43.02 | 36.63 |
| TraesCS1B01G347900.2 | Wheat | nucleus | 42.36 | 36.53 |
| KXG22343 | Sorghum | nucleus | 40.86 | 36.39 |
| Os01t0753500-01 | Rice | plastid | 44.02 | 36.25 |
| GSMUA_Achr3P31350_001 | Banana | nucleus | 47.67 | 36.19 |
| Os05t0515400-01 | Rice | nucleus | 37.21 | 36.01 |
| Zm00001d038698_P001 | Maize | nucleus | 40.03 | 35.44 |
| HORVU1Hr1G087460.6 | Barley | mitochondrion, nucleus | 49.0 | 34.5 |
| CDY43553 | Canola | nucleus | 26.25 | 25.86 |
| CDX68620 | Canola | nucleus | 26.08 | 25.45 |
| CDX88392 | Canola | nucleus | 22.26 | 25.28 |
| CDY15734 | Canola | nucleus | 28.24 | 25.0 |
| CDY04557 | Canola | nucleus | 28.41 | 24.96 |
| CDX68039 | Canola | nucleus | 22.43 | 24.77 |
| CDX79239 | Canola | nucleus | 22.09 | 24.45 |
| CDY46728 | Canola | nucleus | 26.08 | 18.6 |
| CDY30172 | Canola | nucleus | 23.75 | 17.23 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | GO:A0A078FVP7 | UniProt:A0A078FVP7 | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | EnsemblPlants:CDY17209 | ProteinID:CDY17209 | ProteinID:CDY17209.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00095276001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF5 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EEE28E |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g09790DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078FVP7]
Coordinates
chrLK032071:-:433404..436208
Molecular Weight (calculated)
66009.5 Da
IEP (calculated)
6.851
GRAVY (calculated)
-0.431
Length
602 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGLIDLNVT EEQEEETTPS SGSGSLSPCD SSSSASAFGV SGSSSSSGVC LELWHACAGP LISLPKRGSL VLYFPQGHLE QAPDFSAAIY GLPPHVFCRI
101: LDVKLHAETA TDEVYAQVSL LPESEDIERK VREGVIDVDG GEEDYEVVKR TNTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYTQ PRPSQELLAR
201: DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGDDGK LRLGVRRASQ IEGASAFSSQ YNQNMNHNNF AEVAHAISTN SAFNIYYNPK
301: ASWSNFIIPA PKFLKTVDYP FCIGMRFKAR VESEDASERR SPGIITGIND LDPIRWPGSK WRCLLVRWDD TDANGHHQQR ISPWEIEPSG SISSSGSFIT
401: TGPKRSRIGF SSGKPDIPVS GSGATDFEES LRFQRVLQGQ EIFHGFINTS TDGGAGARRG RFKGTEFGDS YGFHKVLQGQ ETVPAYPMMT DQRHQGMSQR
501: NIWCGPFQNF STRILPPSSV HVSSPLPSSG PNVRMEEHHG GSGRCRLFGF PLRDETTAVG SGMVVGPCVE GQNGSSIRGA SAVHTQGRDI YGMRDMLLDI
601: AL
101: LDVKLHAETA TDEVYAQVSL LPESEDIERK VREGVIDVDG GEEDYEVVKR TNTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYTQ PRPSQELLAR
201: DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGDDGK LRLGVRRASQ IEGASAFSSQ YNQNMNHNNF AEVAHAISTN SAFNIYYNPK
301: ASWSNFIIPA PKFLKTVDYP FCIGMRFKAR VESEDASERR SPGIITGIND LDPIRWPGSK WRCLLVRWDD TDANGHHQQR ISPWEIEPSG SISSSGSFIT
401: TGPKRSRIGF SSGKPDIPVS GSGATDFEES LRFQRVLQGQ EIFHGFINTS TDGGAGARRG RFKGTEFGDS YGFHKVLQGQ ETVPAYPMMT DQRHQGMSQR
501: NIWCGPFQNF STRILPPSSV HVSSPLPSSG PNVRMEEHHG GSGRCRLFGF PLRDETTAVG SGMVVGPCVE GQNGSSIRGA SAVHTQGRDI YGMRDMLLDI
601: AL
001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL
Arabidopsis Description
ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.