Factsheet for GSMUA_Achr10P26140_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P31350_001
GSMUA_Achr4P02750_001
GSMUA_Achr4P10590_001
GSMUA_Achr7P11000_001
GSMUA_Achr7P25330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	GSMUA_Achr10P...	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr3P31350_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr4P02750_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr4P10590_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr7P11000_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr7P25330_001	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11000_001	Banana	nucleus	60.52	58.19
Bra021885.1-P	Field mustard	nucleus	43.65	45.47
AT2G33860.1	Thale cress	nucleus	48.0	45.39
CDY17209	Canola	nucleus	47.13	45.02
Bra005465.1-P	Field mustard	nucleus	47.3	44.96
CDY37679	Canola	nucleus	46.09	44.61
CDY27929	Canola	nucleus	46.78	44.24
GSMUA_Achr4P10590_001	Banana	nucleus	51.65	41.6
VIT_10s0003g00420.t01	Wine grape	nucleus	55.65	41.08
GSMUA_Achr4P02750_001	Banana	nucleus	50.96	40.81
KRH50128	Soybean	nucleus	50.26	40.76
GSMUA_Achr7P25330_001	Banana	nucleus	51.48	40.72
KRH20373	Soybean	nucleus	50.26	40.48
KRH21341	Soybean	nucleus	50.26	39.27
Solyc02g077560.2.1	Tomato	nucleus	49.74	38.29
PGSC0003DMT400081282	Potato	nucleus	49.57	38.1
GSMUA_Achr3P31350_001	Banana	nucleus	48.87	35.44
GSMUA_Achr11P...	Banana	nucleus	25.22	26.8
GSMUA_Achr8P18930_001	Banana	nucleus	26.26	26.35
GSMUA_Achr4P18240_001	Banana	nucleus	27.65	26.19
GSMUA_Achr9P29480_001	Banana	nucleus	20.35	26.12
GSMUA_Achr11P...	Banana	nucleus	27.13	25.83
GSMUA_Achr5P03960_001	Banana	nucleus	24.7	25.4
GSMUA_Achr5P18540_001	Banana	nucleus	21.91	24.28
GSMUA_Achr5P14630_001	Banana	nucleus	23.13	24.14
GSMUA_Achr10P...	Banana	nucleus	19.65	22.6
GSMUA_Achr6P18900_001	Banana	plastid	15.65	21.9

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G26140_001	EnsemblPlants:GSMUA_Achr10P26140_001	EnsemblPlants:GSMUA_Achr10T26140_001	InterPro:IPR003340
InterPro:IPR015300	UniProt:M0RLI8	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF5	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002960FA2	SEG:seg	:

Description

Auxin response factor 2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G26140_001]

Coordinates

chr10:-:29855994..29862359

Molecular Weight (calculated)

63597.6 Da

IEP (calculated)

7.939

GRAVY (calculated)

-0.350

Length

575 amino acids

Sequence
(BLAST)

001: MAAAEGRGGE SVCLELWHAC AGPQIWLPRK TSLVVYFPQG HIEQLGGAGG DGDWLGPSDV PPHVLCRVVD VKLQAAADTD EVYAQLSLVA DCKELEQHLR
101: DDETVESRRV EEADGFSKSH TTHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNQLR PLQELVAKDL HGTEWRFRHI YRGQPRRHLL TTGWSAFINK
201: KKLVSGDAVL FLRANDGELR LGIRRADQLK RSIHSAAFSS QKNLGKLTDV ANAVSARTVF CINYDPRASR LGFIIPYWKF TKSFSHSFST GTRFKMQIDS
301: EDAADKRYTG LITGIGELDP LRWPGSKWKC LSVRWDGEVD MAGANRVSPW DIEPTGSASV SDVPPPTAPK KSKISHPPDH LDHTIPNGVG YPDLEEPARF
401: LGVLQGQEIM GLRTLYQGID VTQFKVFGEY VRLQKVFQGQ ETHPPMSTRV LSHLLGTRSS WVRSIHEFSG LGTPCTSSTQ VSSPSSVLMF QQANSKGDHN
501: VLPGGKRNCR LFGFPLTEMI TVPNGIDGCE TAGSSAKQTI HGRCGADPRS MYCCDTILVN IAHLPCFNKL RFCYV

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.