Factsheet for GSMUA_Achr4P18240_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20000_001
GSMUA_Achr1P20010_001
GSMUA_Achr1P20040_001
GSMUA_Achr2P19760_001
GSMUA_Achr2P22730_001
GSMUA_Achr3P16300_001
GSMUA_Achr4P18240_001
GSMUA_Achr5P03960_001
GSMUA_Achr5P09310_001
GSMUA_Achr5P14630_001
GSMUA_Achr5P18540_001
GSMUA_Achr6P09710_001
GSMUA_Achr6P36980_001
GSMUA_Achr7P13680_001
GSMUA_Achr7P24330_001
GSMUA_Achr8P18400_001
GSMUA_Achr8P18930_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P16800_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	GSMUA_Achr1P20000_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr1P20010_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr1P20040_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr6P36980_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr10P...	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr2P19760_001	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr7P24330_001	AT1G34310.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr4P18240_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P03960_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P14630_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P18540_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr8P18930_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr3P16300_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr5P09310_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr7P13680_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_AchrUn_...	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr10P...	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr2P19760_001	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr7P24330_001	AT3G61830.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr3P16300_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_Achr5P09310_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_Achr7P13680_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT5G25890.1	22096563
AT4G30080.1	GSMUA_Achr8P29850_001	AT3G17600.1	21798944
AT4G30080.1	GSMUA_Achr9P16800_001	AT3G17600.1	21798944
AT4G30080.1	GSMUA_Achr10P...	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr2P22730_001	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr6P09710_001	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr8P18400_001	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P14630_001	Banana	nucleus	68.86	75.86
GSMUA_Achr8P18930_001	Banana	nucleus	71.5	75.74
GSMUA_Achr5P03960_001	Banana	nucleus	67.71	73.52
GSMUA_Achr5P18540_001	Banana	nucleus	61.78	72.25
GSMUA_Achr11P...	Banana	nucleus	71.0	71.36
GSMUA_Achr11P...	Banana	nucleus	61.28	68.76
Os06t0685700-01	Rice	nucleus	73.48	63.71
Solyc09g007810.2.1	Tomato	nucleus	71.83	62.82
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	11.53	62.5
PGSC0003DMT400055522	Potato	nucleus	71.0	62.28
TraesCS7B01G346700.1	Wheat	nucleus	70.84	61.96
VIT_06s0004g02750.t01	Wine grape	nucleus	72.49	61.88
Zm00001d014013_P002	Maize	nucleus	65.57	61.8
TraesCS7D01G436800.1	Wheat	nucleus	70.68	61.73
VIT_08s0040g01810.t01	Wine grape	nucleus	63.26	61.64
EER88840	Sorghum	nucleus	71.83	61.5
TraesCS1B01G173700.1	Wheat	nucleus	69.69	61.22
TraesCS1A01G156600.1	Wheat	nucleus	69.36	61.19
EER94066	Sorghum	nucleus	69.36	61.1
TraesCS1D01G155100.1	Wheat	nucleus	69.19	61.05
HORVU1Hr1G041770.1	Barley	nucleus	69.19	61.05
VIT_13s0019g04380.t01	Wine grape	nucleus	68.04	60.82
HORVU7Hr1G101270.1	Barley	nucleus	69.69	60.69
Zm00001d032683_P001	Maize	nucleus	68.04	60.65
TraesCS7A01G446900.1	Wheat	nucleus	69.85	60.48
Zm00001d014507_P002	Maize	nucleus	71.0	59.45
CDY43553	Canola	nucleus	59.8	59.41
Os10t0479900-01	Rice	nucleus	68.2	59.31
KRH32480	Soybean	nucleus	68.37	59.29
CDX68620	Canola	nucleus	59.8	58.83
Os02t0628600-01	Rice	nucleus	65.4	58.3
HORVU5Hr1G024100.1	Barley	cytosol	14.5	58.28
KRH25023	Soybean	nucleus	67.22	58.2
KRH29907	Soybean	nucleus	66.72	58.11
HORVU3Hr1G081710.1	Barley	cytosol	10.05	58.1
KRH22880	Soybean	nucleus	64.09	58.06
Zm00001d000358_P001	Maize	nucleus	66.89	58.0
KRG95987	Soybean	nucleus	66.89	58.0
KRH26435	Soybean	nucleus	66.72	57.86
Solyc11g069500.1.1	Tomato	nucleus	66.23	57.51
Bra011162.1-P	Field mustard	nucleus	60.96	57.19
PGSC0003DMT400020874	Potato	nucleus	65.73	57.08
AT4G30080.1	Thale cress	nucleus	62.6	56.72
EES05458	Sorghum	nucleus	65.57	56.21
Zm00001d017284_P001	Maize	nucleus	64.91	55.73
TraesCS6A01G222300.1	Wheat	nucleus	59.97	54.17
Solyc06g075150.2.1	Tomato	nucleus	59.47	53.8
KRG91907	Soybean	nucleus	52.22	53.46
Zm00001d051172_P001	Maize	nucleus	62.6	53.45
CDY15734	Canola	nucleus	59.8	53.38
CDY04557	Canola	nucleus	60.13	53.28
PGSC0003DMT400062489	Potato	nucleus	58.98	52.96
AT2G28350.1	Thale cress	nucleus	60.46	52.96
KRH34867	Soybean	nucleus	53.05	52.61
Os04t0519700-01	Rice	nucleus	33.77	52.3
Bra011955.1-P	Field mustard	nucleus	60.63	52.2
TraesCS2B01G397300.1	Wheat	nucleus	59.47	50.99
TraesCS6B01G258800.1	Wheat	mitochondrion	62.44	50.74
TraesCS2D01G376600.1	Wheat	nucleus	59.47	50.56
Bra024109.1-P	Field mustard	nucleus	57.5	50.29
HORVU6Hr1G058890.2	Barley	mitochondrion	62.77	50.2
TraesCS6D01G212700.1	Wheat	plastid	62.27	49.15
TraesCS2A01G380300.1	Wheat	nucleus	32.62	49.01
HORVU2Hr1G089670.1	Barley	nucleus	56.18	48.03
Solyc10g086130.1.1	Tomato	nucleus	49.59	47.7
KXG26729	Sorghum	nucleus, plastid	54.37	45.71
KXG36152	Sorghum	nucleus	49.92	45.7
CDY46728	Canola	nucleus	61.61	44.31
CDY30172	Canola	nucleus	57.83	42.29
Zm00001d025871_P001	Maize	nucleus	40.86	42.18
GSMUA_Achr9P29480_001	Banana	nucleus	29.82	40.4
HORVU7Hr1G021880.1	Barley	nucleus	13.67	37.56
GSMUA_Achr6P18900_001	Banana	plastid	23.72	35.04
GSMUA_Achr10P...	Banana	nucleus	25.86	31.4
GSMUA_Achr10P...	Banana	nucleus	26.19	27.65
HORVU2Hr1G089660.8	Barley	nucleus	14.17	26.46
GSMUA_Achr7P11000_001	Banana	nucleus	23.56	23.91
GSMUA_Achr4P10590_001	Banana	nucleus	26.19	22.27
GSMUA_Achr7P25330_001	Banana	nucleus	25.37	21.18
GSMUA_Achr4P02750_001	Banana	nucleus	24.88	21.03
GSMUA_Achr3P31350_001	Banana	nucleus	25.21	19.29

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G18240_001	EnsemblPlants:GSMUA_Achr4P18240_001
EnsemblPlants:GSMUA_Achr4T18240_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0SPY7	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF27
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000296CCB7	SEG:seg	:

Description

Auxin response factor 18 [Source:GMGC_GENE;Acc:GSMUA_Achr4G18240_001]

Coordinates

chr4:-:18915519..18921080

Molecular Weight (calculated)

66628.3 Da

IEP (calculated)

6.858

GRAVY (calculated)

-0.305

Length

607 amino acids

Sequence
(BLAST)

001: MLTFSKSMKE SSMKQSDKCL DSQLWHACAG GMVQMPAVNS KVYYFPQGHT EHAQGLTDEV FAKISLVPLR PNEPDFGEDD GLGLSINGVD VQEKPASFAK
101: TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGEIWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTENG DLCVGIRRAK
201: RGGIGGGPDI PSGWNPPDSV IEAATLAANG QPFEVVYYPR ASTPEFCVKA ASVKAAMRIQ WCPGMRFKMA FETEDSSRIS WFMGTISSVQ IADPVRWPNS
301: PWRLLQVTWD EPDLLQNVNR VNPWLVELVS NMPAIHLAPF SPPRKKLRIP QHPDFPLEGQ LSTPMFPGNP LGHCTSPLFC FPDSTPAGIQ GARHSQFGIS
401: LSDLHHNKLQ SGLFHAGFHR LNHTSSLSRI SAGVAVDSPA IDKNISCLLT IGNTSQSIKN PCNAKPQQLM LFGKPILTEE QISLSNSGDM VSPGATGYSS
501: PDGNLEKTTK FPEASDLGLE TGHCKVFMES DDVGRTLDLS VFGSYEELYR RLADMFGIEK SEMMSHVIYK DAAGAVKLTG DEPFSDFMKT ARRLTILTDS
601: GSDNIGR

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.