Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G081710.1 | Barley | cytosol | 54.97 | 79.05 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 48.34 | 65.18 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 56.95 | 38.91 |
| HORVU6Hr1G070410.1 | Barley | cytosol | 22.52 | 34.69 |
| HORVU4Hr1G080510.1 | Barley | cytosol | 25.17 | 34.23 |
| HORVU4Hr1G031990.1 | Barley | cytosol | 16.56 | 33.33 |
| HORVU5Hr1G054640.1 | Barley | cytosol | 23.84 | 32.43 |
| Os04t0519700-01 | Rice | nucleus | 64.9 | 25.0 |
| HORVU1Hr1G049680.1 | Barley | cytosol | 13.91 | 19.63 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 80.79 | 17.18 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 78.81 | 16.81 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 77.48 | 16.39 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 58.94 | 15.53 |
| GSMUA_Achr11P... | Banana | nucleus | 58.94 | 14.74 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 60.26 | 14.61 |
| KRH34867 | Soybean | nucleus | 58.94 | 14.54 |
| KRG91907 | Soybean | nucleus | 56.95 | 14.5 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 58.28 | 14.5 |
| CDX68620 | Canola | nucleus | 56.29 | 13.78 |
| CDY43553 | Canola | nucleus | 55.63 | 13.75 |
| KRH22880 | Soybean | nucleus | 59.6 | 13.43 |
| GSMUA_Achr11P... | Banana | nucleus | 47.68 | 13.31 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 60.93 | 13.2 |
| Solyc10g086130.1.1 | Tomato | nucleus | 54.97 | 13.15 |
| Bra011162.1-P | Field mustard | nucleus | 56.29 | 13.14 |
| AT4G30080.1 | Thale cress | nucleus | 58.28 | 13.13 |
| KRH26435 | Soybean | nucleus | 59.6 | 12.86 |
| KRH32480 | Soybean | nucleus | 58.94 | 12.71 |
| Bra024109.1-P | Field mustard | nucleus | 58.28 | 12.68 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 56.95 | 12.67 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 59.6 | 12.66 |
| PGSC0003DMT400055522 | Potato | nucleus | 57.62 | 12.57 |
| AT2G28350.1 | Thale cress | nucleus | 57.62 | 12.55 |
| Solyc09g007810.2.1 | Tomato | nucleus | 57.62 | 12.54 |
| CDY15734 | Canola | nucleus | 56.29 | 12.5 |
| KRG95987 | Soybean | nucleus | 57.62 | 12.43 |
| Zm00001d025871_P001 | Maize | nucleus | 48.34 | 12.41 |
| CDY04557 | Canola | nucleus | 56.29 | 12.41 |
| KRH29907 | Soybean | nucleus | 56.95 | 12.34 |
| KRH25023 | Soybean | nucleus | 56.95 | 12.27 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 54.97 | 12.06 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 60.26 | 11.99 |
| Bra011955.1-P | Field mustard | nucleus | 55.63 | 11.91 |
| PGSC0003DMT400020874 | Potato | nucleus | 54.97 | 11.87 |
| Solyc11g069500.1.1 | Tomato | nucleus | 54.97 | 11.87 |
| KXG26729 | Sorghum | nucleus, plastid | 55.63 | 11.63 |
| KXG36152 | Sorghum | nucleus | 49.67 | 11.31 |
| Solyc06g075150.2.1 | Tomato | nucleus | 49.01 | 11.03 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 37.75 | 10.98 |
| PGSC0003DMT400062489 | Potato | nucleus | 49.01 | 10.95 |
| HORVU7Hr1G108360.1 | Barley | nucleus | 23.84 | 10.65 |
| CDY30172 | Canola | nucleus | 58.28 | 10.6 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 39.07 | 10.55 |
| CDY46728 | Canola | nucleus | 57.62 | 10.31 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 31.13 | 8.53 |
| HORVU3Hr1G072340.2 | Barley | nucleus | 37.75 | 8.41 |
| HORVU1Hr1G076690.6 | Barley | nucleus | 35.76 | 7.75 |
| HORVU1Hr1G087460.6 | Barley | mitochondrion, nucleus | 41.72 | 7.37 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 7.28 | 3.38 |
| HORVU6Hr1G026750.1 | Barley | cytosol, nucleus, plastid | 2.65 | 2.06 |
| TraesCS2A01G380300.1 | Wheat | nucleus | 5.3 | 1.98 |
| HORVU2Hr1G125740.1 | Barley | nucleus | 1.32 | 0.51 |
Protein Annotations
| Gene3D:2.40.330.10 | MapMan:35.1 | UniProt:A0A287QNR0 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G024100 | EnsemblPlants:HORVU5Hr1G024100.1 | InterPro:IPR003340 | InterPro:IPR015300 |
| PFAM:PF02362 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF15 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI000B479938 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:129203308..129204240
Molecular Weight (calculated)
17026.2 Da
IEP (calculated)
6.228
GRAVY (calculated)
-0.124
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAHSDEVF TKISLVPIRH SDPAVDVVAA AAEGRAEDDR PKPASFAKRI TQSDANNGGG FSVPRFCTET IFPALDYSSE PIVQSIIVRD VHEDEFKFRH
101: IYRGTLLYHL LTTSWSNFVN QKKLVADDSI VFLRCQLVLM PWWYASCLQH A
101: IYRGTLLYHL LTTSWSNFVN QKKLVADDSI VFLRCQLVLM PWWYASCLQH A
001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
Arabidopsis Description
ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.