Factsheet for HORVU1Hr1G076690.6

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076690.6
HORVU1Hr1G087460.6
HORVU3Hr1G072340.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	HORVU1Hr1G076690.6	AT2G33860.1	24485461
AT2G33860.1	HORVU1Hr1G087460.6	AT2G33860.1	24485461
AT2G33860.1	HORVU3Hr1G072340.2	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G334900.1	Wheat	nucleus	88.09	86.85
TraesCS1B01G347900.2	Wheat	nucleus	86.8	86.68
TraesCS1D01G337400.1	Wheat	nucleus	86.66	86.53
KXG22343	Sorghum	nucleus	61.69	63.61
Os05t0515400-01	Rice	nucleus	56.67	63.5
Zm00001d038698_P001	Maize	nucleus	60.11	61.62
HORVU3Hr1G072340.2	Barley	nucleus	55.24	56.78
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	7.6	47.32
HORVU6Hr1G070410.1	Barley	cytosol	6.46	45.92
HORVU4Hr1G031990.1	Barley	cytosol	4.88	45.33
HORVU4Hr1G080510.1	Barley	cytosol	7.03	44.14
HORVU5Hr1G054640.1	Barley	cytosol	7.03	44.14
CDY37679	Canola	nucleus	37.59	44.11
Bra021885.1-P	Field mustard	nucleus	34.86	44.02
AT2G33860.1	Thale cress	nucleus	38.31	43.91
CDY17209	Canola	nucleus	37.45	43.36
Bra005465.1-P	Field mustard	nucleus	37.45	43.14
CDY27929	Canola	nucleus	37.45	42.93
GSMUA_Achr4P10590_001	Banana	nucleus	42.75	41.74
KRH20373	Soybean	nucleus	41.75	40.76
KRH50128	Soybean	nucleus	41.32	40.62
GSMUA_Achr4P02750_001	Banana	nucleus	41.46	40.25
KRH21341	Soybean	nucleus	41.32	39.13
HORVU3Hr1G081710.1	Barley	cytosol	5.88	39.05
VIT_10s0003g00420.t01	Wine grape	nucleus	43.62	39.02
GSMUA_Achr7P25330_001	Banana	nucleus	40.03	38.38
Solyc02g077560.2.1	Tomato	nucleus	40.6	37.88
PGSC0003DMT400081282	Potato	nucleus	40.46	37.7
GSMUA_Achr3P31350_001	Banana	nucleus	42.47	37.33
HORVU5Hr1G024100.1	Barley	cytosol	7.75	35.76
HORVU1Hr1G049680.1	Barley	cytosol	5.45	35.51
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	43.19	35.2
HORVU1Hr1G041770.1	Barley	nucleus	25.82	26.16
HORVU7Hr1G021880.1	Barley	nucleus	8.03	25.34
HORVU7Hr1G101270.1	Barley	nucleus	24.68	24.68
HORVU2Hr1G089670.1	Barley	nucleus	23.82	23.38
HORVU6Hr1G058890.2	Barley	mitochondrion	24.53	22.53
HORVU7Hr1G108360.1	Barley	nucleus	10.76	22.19
HORVU2Hr1G089660.8	Barley	nucleus	5.88	12.62
HORVU6Hr1G026750.1	Barley	cytosol, nucleus, plastid	3.44	12.37
HORVU2Hr1G125740.1	Barley	nucleus	5.31	9.51

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	UniProt:A0A287GBD8	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:HORVU1Hr1G076690	EnsemblPlants:HORVU1Hr1G076690.6	InterPro:IPR003340
InterPro:IPR015300	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF23
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000B47CEE8	SEG:seg	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287GBD8]

Coordinates

chrchr1H:+:515218527..515223663

Molecular Weight (calculated)

75661.7 Da

IEP (calculated)

7.550

GRAVY (calculated)

-0.426

Length

697 amino acids

Sequence
(BLAST)

001: MGIDLNTVEE DGETAGAVCG ELWHACAGPG VALPRRGSAV VYLPQAHLAA GGGDAPAPAG RAHVPPHVAC RVVGVELCVS VATDEVYARL ALVAEAEMFR
101: QSVRERGSEE GEDEMAAGDG ENKPRMPHMF CKTLTASDTS THGGFSVPRR AAEDCFAHLD YKQVRPSQEL VAKDLHGTQW RFRHIYRGQP RRHLLTTGWS
201: SFVNKKKLVS GDAVLFLRGD DGELRLGVRR AVQLRNEALF EAVNTNDSKL HTLSAVASSL ENRSIFHVCF DPRSGASEFI VPYWRFSKSL NHTFSIGMRF
301: KVSNESDDAN ERSTGLISGI SEVDPIRWPA SKWRCLMVRW DDSTHCNHQR RVSPWEIERV GGSISVTDCL SASSSKRAKL YFPQGNLDAP VTDGNGCLDS
401: MEAGNFHRVL QGQELLMGSR TQGAGRSQSP DVARFRPPDH IRFSANVRNY IPQQSSEFPY HSSGFGESVR FSEVLQGQEM SQALRFYQGS AFDARTQHGG
501: AGPFGYTQRS AAPIGLSPAA QGYPLNQFTP SAVAAAKVSS PSSVLMFNQA TVPQFDLESR TSSYIGAYGG QCRPMEMVRE TEKTWPCAQR QRPSVTGTGC
601: RRFEEWIKAS TPASTDGSRP GSAAARDVVV GRSNCRLFGF SLTDQKAVGG AGGDGGANEG NSNDEQDCAD PRVLDLFGRG HHAPSAMRAI VAAPLGM

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.