Factsheet for HORVU7Hr1G021880.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G017770.6
HORVU1Hr1G028170.4
HORVU1Hr1G035720.2
HORVU1Hr1G041770.1
HORVU2Hr1G010630.1
HORVU2Hr1G010670.1
HORVU2Hr1G010690.1
HORVU2Hr1G089660.8
HORVU2Hr1G089670.1
HORVU2Hr1G109650.18
HORVU3Hr1G019750.4
HORVU3Hr1G032230.6
HORVU3Hr1G070620.5
HORVU3Hr1G081710.1
HORVU4Hr1G078490.1
HORVU5Hr1G024100.1
HORVU5Hr1G033540.2
HORVU5Hr1G038630.1
HORVU5Hr1G050990.4
HORVU5Hr1G051010.2
HORVU6Hr1G058890.2
HORVU7Hr1G021880.1
HORVU7Hr1G048050.2
HORVU7Hr1G101270.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	HORVU2Hr1G109650.18	AT1G19850.1	22096563
AT2G28350.1	HORVU3Hr1G032230.6	AT1G34310.1	22096563
AT2G28350.1	HORVU1Hr1G041770.1	AT2G28350.1	22096563
AT2G28350.1	HORVU2Hr1G089660.8	AT2G28350.1	22096563
AT2G28350.1	HORVU2Hr1G089670.1	AT2G28350.1	22096563
AT2G28350.1	HORVU3Hr1G081710.1	AT2G28350.1	22096563
AT2G28350.1	HORVU4Hr1G078490.1	AT2G28350.1	22096563
AT2G28350.1	HORVU5Hr1G024100.1	AT2G28350.1	22096563
AT2G28350.1	HORVU6Hr1G058890.2	AT2G28350.1	22096563
AT2G28350.1	HORVU7Hr1G021880.1	AT2G28350.1	22096563
AT2G28350.1	HORVU7Hr1G101270.1	AT2G28350.1	22096563
AT2G28350.1	HORVU1Hr1G028170.4	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G019750.4	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G070620.5	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G032230.6	AT3G61830.1	22096563
AT2G28350.1	HORVU1Hr1G028170.4	AT5G25890.1	22096563
AT2G28350.1	HORVU3Hr1G019750.4	AT5G25890.1	22096563
AT2G28350.1	HORVU3Hr1G070620.5	AT5G25890.1	22096563
AT4G30080.1	HORVU1Hr1G017770.6	AT3G17600.1	21798944
AT4G30080.1	HORVU1Hr1G035720.2	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010630.1	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010670.1	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010690.1	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G033540.2	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G038630.1	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G050990.4	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G051010.2	AT5G38420.1	21798944
AT4G30080.1	HORVU7Hr1G048050.2	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G081710.1	Barley	cytosol	37.1	78.1
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	31.22	61.61
HORVU5Hr1G024100.1	Barley	cytosol	38.91	56.95
HORVU6Hr1G070410.1	Barley	cytosol	13.57	30.61
HORVU4Hr1G080510.1	Barley	cytosol	14.48	28.83
HORVU5Hr1G054640.1	Barley	cytosol	12.67	25.23
HORVU4Hr1G031990.1	Barley	cytosol	8.14	24.0
Os04t0519700-01	Rice	nucleus	41.18	23.21
HORVU2Hr1G089670.1	Barley	nucleus	52.49	16.34
TraesCS2D01G376600.1	Wheat	nucleus	51.58	15.97
TraesCS2B01G397300.1	Wheat	nucleus	50.68	15.82
VIT_08s0040g01810.t01	Wine grape	nucleus	39.37	13.96
GSMUA_Achr8P18930_001	Banana	nucleus	35.75	13.79
GSMUA_Achr4P18240_001	Banana	nucleus	37.56	13.67
GSMUA_Achr11P...	Banana	nucleus	37.1	13.58
KRG91907	Soybean	nucleus	36.2	13.49
KRH34867	Soybean	nucleus	37.1	13.4
HORVU1Hr1G049680.1	Barley	cytosol	6.33	13.08
CDY43553	Canola	nucleus	35.29	12.77
CDX68620	Canola	nucleus	35.29	12.64
VIT_13s0019g04380.t01	Wine grape	nucleus	38.46	12.52
KRH32480	Soybean	nucleus	39.37	12.43
KRH22880	Soybean	nucleus	37.56	12.39
Bra011162.1-P	Field mustard	nucleus	36.2	12.36
KRG95987	Soybean	nucleus	38.91	12.29
PGSC0003DMT400055522	Potato	nucleus	38.46	12.28
Solyc09g007810.2.1	Tomato	nucleus	38.46	12.25
AT4G30080.1	Thale cress	nucleus	37.1	12.24
HORVU1Hr1G041770.1	Barley	nucleus	38.01	12.21
HORVU7Hr1G101270.1	Barley	nucleus	38.01	12.05
KRH26435	Soybean	nucleus	38.01	12.0
Bra024109.1-P	Field mustard	nucleus	37.56	11.96
HORVU6Hr1G058890.2	Barley	mitochondrion	40.72	11.86
GSMUA_Achr11P...	Banana	nucleus	28.96	11.83
VIT_06s0004g02750.t01	Wine grape	nucleus	38.01	11.81
PGSC0003DMT400020874	Potato	nucleus	36.65	11.59
Solyc11g069500.1.1	Tomato	nucleus	36.65	11.59
CDY15734	Canola	nucleus	35.29	11.47
KRH25023	Soybean	nucleus	35.75	11.27
AT2G28350.1	Thale cress	nucleus	35.29	11.26
CDY04557	Canola	nucleus	34.84	11.24
KRH29907	Soybean	nucleus	35.29	11.19
Solyc06g075150.2.1	Tomato	nucleus	33.94	11.18
KXG36152	Sorghum	nucleus	33.48	11.16
PGSC0003DMT400062489	Potato	nucleus	33.48	10.95
Solyc10g086130.1.1	Tomato	nucleus	31.22	10.94
Bra011955.1-P	Field mustard	nucleus	34.84	10.92
KXG26729	Sorghum	nucleus, plastid	34.84	10.66
Zm00001d025871_P001	Maize	nucleus	27.6	10.37
CDY30172	Canola	nucleus	37.56	10.0
GSMUA_Achr5P03960_001	Banana	nucleus	24.89	9.84
CDY46728	Canola	nucleus	36.65	9.6
GSMUA_Achr5P18540_001	Banana	nucleus	22.17	9.44
HORVU7Hr1G108360.1	Barley	nucleus	14.03	9.17
HORVU3Hr1G072340.2	Barley	nucleus	26.24	8.55
HORVU1Hr1G076690.6	Barley	nucleus	25.34	8.03
GSMUA_Achr5P14630_001	Banana	nucleus	19.0	7.62
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	28.05	7.25
HORVU2Hr1G089660.8	Barley	nucleus	5.88	4.0
HORVU6Hr1G026750.1	Barley	cytosol, nucleus, plastid	0.9	1.03
TraesCS2A01G380300.1	Wheat	nucleus	1.81	0.99
HORVU2Hr1G125740.1	Barley	nucleus	0.0	0.0

Protein Annotations

Gene3D:2.40.330.10	MapMan:35.1	UniProt:A0A287VNJ7	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU7Hr1G021880	EnsemblPlants:HORVU7Hr1G021880.1	InterPro:IPR003340	InterPro:IPR015300
PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF15	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI000B4615E3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:31464738..31465918

Molecular Weight (calculated)

15555.2 Da

IEP (calculated)

6.620

GRAVY (calculated)

-0.195

Length

221 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XVDVGDVAAE GRAEDDCPKS
101: ASFAKTLTQS NANHDGGFSV PRFCIETIFS ALDYSSDPPL QSILVRDVHG DAFKFHHIYR GTPLRHLLTI DWRNFVNQKK LLAGDSIVFL RCDGGEVHVG
201: VRRAKGVFCD EGYSGWDHYR A

Best Arabidopsis Sequence Match ( AT2G28350.1 )
(BLAST)

001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA

Arabidopsis Description

ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.