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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • cytosol 1
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, nucleus, plastid
MultiLoc:cytosol
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G017770.6
HORVU1Hr1G028170.4
HORVU1Hr1G035720.2
HORVU1Hr1G041770.1
HORVU2Hr1G010630.1
HORVU2Hr1G010670.1
HORVU2Hr1G010690.1
HORVU2Hr1G089660.8
HORVU2Hr1G089670.1
HORVU2Hr1G109650.18
HORVU3Hr1G019750.4
HORVU3Hr1G032230.6
HORVU3Hr1G070620.5
HORVU3Hr1G081710.1
HORVU4Hr1G078490.1
HORVU5Hr1G024100.1
HORVU5Hr1G033540.2
HORVU5Hr1G038630.1
HORVU5Hr1G050990.4
HORVU5Hr1G051010.2
HORVU6Hr1G058890.2
HORVU7Hr1G021880.1
HORVU7Hr1G048050.2
HORVU7Hr1G101270.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G28350.1 HORVU2Hr1G109650.18 AT1G19850.1 22096563
AT2G28350.1 HORVU3Hr1G032230.6 AT1G34310.1 22096563
AT2G28350.1 HORVU1Hr1G041770.1 AT2G28350.1 22096563
AT2G28350.1 HORVU2Hr1G089660.8 AT2G28350.1 22096563
AT2G28350.1 HORVU2Hr1G089670.1 AT2G28350.1 22096563
AT2G28350.1 HORVU3Hr1G081710.1 AT2G28350.1 22096563
AT2G28350.1 HORVU4Hr1G078490.1 AT2G28350.1 22096563
AT2G28350.1 HORVU5Hr1G024100.1 AT2G28350.1 22096563
AT2G28350.1 HORVU6Hr1G058890.2 AT2G28350.1 22096563
AT2G28350.1 HORVU7Hr1G021880.1 AT2G28350.1 22096563
AT2G28350.1 HORVU7Hr1G101270.1 AT2G28350.1 22096563
AT2G28350.1 HORVU1Hr1G028170.4 AT3G16500.1 21734647
AT2G28350.1 HORVU3Hr1G019750.4 AT3G16500.1 21734647
AT2G28350.1 HORVU3Hr1G070620.5 AT3G16500.1 21734647
AT2G28350.1 HORVU3Hr1G032230.6 AT3G61830.1 22096563
AT2G28350.1 HORVU1Hr1G028170.4 AT5G25890.1 22096563
AT2G28350.1 HORVU3Hr1G019750.4 AT5G25890.1 22096563
AT2G28350.1 HORVU3Hr1G070620.5 AT5G25890.1 22096563
AT4G30080.1 HORVU1Hr1G017770.6 AT3G17600.1 21798944
AT4G30080.1 HORVU1Hr1G035720.2 AT5G38420.1 21798944
AT4G30080.1 HORVU2Hr1G010630.1 AT5G38420.1 21798944
AT4G30080.1 HORVU2Hr1G010670.1 AT5G38420.1 21798944
AT4G30080.1 HORVU2Hr1G010690.1 AT5G38420.1 21798944
AT4G30080.1 HORVU5Hr1G033540.2 AT5G38420.1 21798944
AT4G30080.1 HORVU5Hr1G038630.1 AT5G38420.1 21798944
AT4G30080.1 HORVU5Hr1G050990.4 AT5G38420.1 21798944
AT4G30080.1 HORVU5Hr1G051010.2 AT5G38420.1 21798944
AT4G30080.1 HORVU7Hr1G048050.2 AT5G38420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU3Hr1G081710.1 Barley cytosol 48.21 51.43
HORVU5Hr1G024100.1 Barley cytosol 65.18 48.34
HORVU7Hr1G021880.1 Barley nucleus 61.61 31.22
HORVU6Hr1G070410.1 Barley cytosol 25.0 28.57
HORVU5Hr1G054640.1 Barley cytosol 22.32 22.52
HORVU4Hr1G080510.1 Barley cytosol 22.32 22.52
HORVU4Hr1G031990.1 Barley cytosol 12.5 18.67
Os04t0519700-01 Rice nucleus 61.61 17.6
HORVU2Hr1G089670.1 Barley nucleus 78.57 12.39
GSMUA_Achr8P18930_001 Banana nucleus 63.39 12.39
TraesCS2D01G376600.1 Wheat nucleus 76.79 12.04
TraesCS2B01G397300.1 Wheat nucleus 75.89 12.01
GSMUA_Achr11P... Banana nucleus 64.29 11.92
CDY43553 Canola nucleus 64.29 11.78
KRH34867 Soybean nucleus 64.29 11.76
KRG91907 Soybean nucleus 61.61 11.64
GSMUA_Achr4P18240_001 Banana nucleus 62.5 11.53
CDX68620 Canola nucleus 63.39 11.51
KRH22880 Soybean nucleus 66.96 11.19
Bra011162.1-P Field mustard nucleus 64.29 11.13
VIT_08s0040g01810.t01 Wine grape nucleus 61.61 11.08
AT4G30080.1 Thale cress nucleus 65.18 10.9
CDY15734 Canola nucleus 64.29 10.59
PGSC0003DMT400055522 Potato nucleus 65.18 10.55
Solyc09g007810.2.1 Tomato nucleus 65.18 10.52
CDY04557 Canola nucleus 64.29 10.51
HORVU1Hr1G041770.1 Barley nucleus 64.29 10.47
VIT_13s0019g04380.t01 Wine grape nucleus 63.39 10.46
KRG95987 Soybean nucleus 65.18 10.43
KRH26435 Soybean nucleus 65.18 10.43
VIT_06s0004g02750.t01 Wine grape nucleus 66.07 10.41
AT2G28350.1 Thale cress nucleus 64.29 10.39
Bra024109.1-P Field mustard nucleus 64.29 10.37
Solyc10g086130.1.1 Tomato nucleus 58.04 10.3
KRH32480 Soybean nucleus 64.29 10.29
HORVU1Hr1G049680.1 Barley cytosol 9.82 10.28
Bra011955.1-P Field mustard nucleus 64.29 10.21
HORVU7Hr1G101270.1 Barley nucleus 63.39 10.19
PGSC0003DMT400020874 Potato nucleus 62.5 10.01
Solyc11g069500.1.1 Tomato nucleus 62.5 10.01
KRH25023 Soybean nucleus 62.5 9.99
KRH29907 Soybean nucleus 61.61 9.9
Zm00001d025871_P001 Maize nucleus 51.79 9.86
GSMUA_Achr11P... Banana nucleus 47.32 9.8
Solyc06g075150.2.1 Tomato nucleus 58.04 9.69
HORVU6Hr1G058890.2 Barley mitochondrion 65.18 9.62
PGSC0003DMT400062489 Potato nucleus 58.04 9.62
GSMUA_Achr5P18540_001 Banana nucleus 43.75 9.44
KXG26729 Sorghum nucleus, plastid 60.71 9.42
KXG36152 Sorghum nucleus 55.36 9.35
CDY30172 Canola nucleus 64.29 8.67
CDY46728 Canola nucleus 64.29 8.53
GSMUA_Achr5P03960_001 Banana nucleus 41.96 8.41
GSMUA_Achr5P14630_001 Banana nucleus 39.29 7.99
HORVU3Hr1G072340.2 Barley nucleus 46.43 7.67
HORVU1Hr1G076690.6 Barley nucleus 47.32 7.6
HORVU1Hr1G087460.6 Barley mitochondrion, nucleus 47.32 6.2
HORVU7Hr1G108360.1 Barley nucleus 16.96 5.62
HORVU2Hr1G089660.8 Barley nucleus 9.82 3.38
TraesCS2A01G380300.1 Wheat nucleus 8.93 2.48
HORVU6Hr1G026750.1 Barley cytosol, nucleus, plastid 2.68 1.55
HORVU2Hr1G125740.1 Barley nucleus 1.79 0.51
Protein Annotations
Gene3D:2.40.330.10MapMan:35.1UniProt:A0A287PS15InterPro:B3_DNA-bdInterPro:DNA-bd_pseudobarrel_sfGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:HORVU4Hr1G078490EnsemblPlants:HORVU4Hr1G078490.1InterPro:IPR003340InterPro:IPR015300
PFAM:PF02362PFscan:PS50863PANTHER:PTHR31384PANTHER:PTHR31384:SF15SMART:SM01019SUPFAM:SSF101936
UniParc:UPI000B464742:::::
Description
No Description!
Coordinates
chrchr4H:+:607700879..607701759
Molecular Weight (calculated)
12665.4 Da
IEP (calculated)
9.682
GRAVY (calculated)
0.081
Length
112 amino acids
Sequence
(BLAST)
001: MQSDANKGGG FSVPRFCTET IFPALDYSSE PPVQSIVVRY VHGDEFKFRH IYRGTPLRHL LTTGWSNFVN QKKLLAGDSI VFLRLTKVDW CFFMKLTRSV
101: GAHAVVVCQL LA
Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)
001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
Arabidopsis Description
ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.