Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29907 | Soybean | nucleus | 92.01 | 92.54 |
| KRH26435 | Soybean | nucleus | 75.04 | 75.14 |
| KRH22880 | Soybean | nucleus | 71.47 | 74.78 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 69.47 | 68.5 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 58.2 | 67.22 |
| KRH19868 | Soybean | nucleus | 8.42 | 66.29 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 54.07 | 66.14 |
| KRH19870 | Soybean | nucleus | 47.79 | 65.18 |
| GSMUA_Achr11P... | Banana | nucleus | 56.06 | 65.07 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 48.07 | 64.93 |
| GSMUA_Achr11P... | Banana | nucleus | 49.93 | 64.69 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 50.36 | 64.07 |
| PGSC0003DMT400020874 | Potato | nucleus | 63.77 | 63.95 |
| Solyc11g069500.1.1 | Tomato | nucleus | 63.48 | 63.66 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 50.64 | 63.51 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 9.99 | 62.5 |
| Zm00001d014013_P002 | Maize | nucleus | 57.35 | 62.42 |
| TraesCS1A01G156600.1 | Wheat | nucleus | 60.2 | 61.34 |
| EER94066 | Sorghum | nucleus | 59.91 | 60.96 |
| TraesCS1D01G155100.1 | Wheat | nucleus | 59.77 | 60.9 |
| TraesCS1B01G173700.1 | Wheat | nucleus | 59.77 | 60.64 |
| Os06t0685700-01 | Rice | nucleus | 60.48 | 60.57 |
| KRH32480 | Soybean | nucleus | 60.48 | 60.57 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 59.2 | 60.32 |
| TraesCS7B01G346700.1 | Wheat | nucleus | 59.63 | 60.23 |
| TraesCS7D01G436800.1 | Wheat | nucleus | 59.63 | 60.14 |
| Zm00001d032683_P001 | Maize | nucleus | 58.35 | 60.06 |
| CDY15734 | Canola | nucleus | 58.2 | 60.0 |
| EER88840 | Sorghum | nucleus | 60.63 | 59.94 |
| CDY04557 | Canola | nucleus | 58.49 | 59.85 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 59.2 | 59.54 |
| AT2G28350.1 | Thale cress | nucleus | 58.77 | 59.45 |
| Bra011955.1-P | Field mustard | nucleus | 59.63 | 59.29 |
| TraesCS7A01G446900.1 | Wheat | nucleus | 59.06 | 59.06 |
| Os10t0479900-01 | Rice | nucleus | 58.49 | 58.74 |
| PGSC0003DMT400062489 | Potato | nucleus | 56.49 | 58.58 |
| Solyc06g075150.2.1 | Tomato | nucleus | 55.92 | 58.42 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 8.7 | 58.1 |
| Zm00001d014507_P002 | Maize | nucleus | 60.06 | 58.07 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 12.27 | 56.95 |
| Zm00001d000358_P001 | Maize | nucleus | 56.63 | 56.71 |
| KRG95987 | Soybean | nucleus | 56.63 | 56.71 |
| Os02t0628600-01 | Rice | nucleus | 54.07 | 55.65 |
| KRG91907 | Soybean | nucleus | 46.79 | 55.31 |
| KRH34867 | Soybean | nucleus | 48.07 | 55.07 |
| Os04t0519700-01 | Rice | nucleus | 29.96 | 53.57 |
| EES05458 | Sorghum | nucleus | 53.78 | 53.25 |
| Zm00001d017284_P001 | Maize | nucleus | 52.78 | 52.33 |
| TraesCS6A01G222300.1 | Wheat | nucleus | 49.22 | 51.34 |
| Zm00001d051172_P001 | Maize | nucleus | 51.64 | 50.91 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 50.78 | 49.86 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 50.36 | 49.86 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 48.93 | 48.31 |
| TraesCS6B01G258800.1 | Wheat | mitochondrion | 51.07 | 47.92 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 51.07 | 47.17 |
| TraesCS6D01G212700.1 | Wheat | plastid | 51.07 | 46.55 |
| KXG36152 | Sorghum | nucleus | 42.8 | 45.25 |
| KRH16622 | Soybean | mitochondrion | 8.42 | 44.7 |
| TraesCS2A01G380300.1 | Wheat | nucleus | 25.68 | 44.55 |
| KXG26729 | Sorghum | nucleus, plastid | 44.94 | 43.63 |
| Zm00001d025871_P001 | Maize | nucleus | 35.66 | 42.52 |
| KRH25669 | Soybean | cytosol | 6.42 | 40.18 |
| KRH10952 | Soybean | nucleus | 16.41 | 39.52 |
| KRH18828 | Soybean | nucleus | 30.24 | 38.48 |
| KRH64757 | Soybean | plastid | 30.53 | 38.08 |
| KRH16623 | Soybean | nucleus | 19.83 | 36.01 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 11.27 | 35.75 |
| KRH50128 | Soybean | nucleus | 26.82 | 26.52 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 12.13 | 26.15 |
| KRH20373 | Soybean | nucleus | 26.53 | 26.05 |
| KRH21341 | Soybean | nucleus | 26.53 | 25.27 |
| KRH10951 | Soybean | cytosol, nucleus | 10.13 | 16.59 |
Protein Annotations
| EntrezGene:100814686 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | EMBL:ACUP02007196 |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | EnsemblPlantsGene:GLYMA_12G076200 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 |
| GO:GO:0009987 | UniProt:I1LR43 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | EnsemblPlants:KRH25023 |
| ProteinID:KRH25023 | ProteinID:KRH25023.1 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 |
| PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF27 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI000233D736 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:5851956..5855787
Molecular Weight (calculated)
77192.9 Da
IEP (calculated)
8.073
GRAVY (calculated)
-0.348
Length
701 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEGEKVLDP QLWHACAGGM VQMPQMNSKV FYFPQGHAEH AHTNIHLRLP PFILCNVEAV KFMANPETDE VFAKLSLLPL RNSELGADSD GAGGDDVAEP
101: SCCEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY TAEPPVQTVV AKDVHGETWR FRHIYRGTPR RHLLTTGWSS FVNQKKLVAG DSVVFLRAEN
201: GDLCVGIRRA KKGISEGSGS GSSSVWSSAS GSGNGNCGIG PYGPFSFFLK EENKMLRNGC GGNLSGRVKV RAEDVVEAVT LAASNKPFEV VYYPRASTPE
301: FCVKASAVRA AMRIQWCSGM RFKMAFETED ASRISWFMGT IASVQVVDPI RWPNSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNIPLI NFTPFSPPRK
401: KLRPQHPDFP LDVQFPIPMF SGNQLGPNSP LCGFSDNAPA GIQGARHAQF GKSLSDLHLN NKLQLGMLPT NIHQLGVYNE ISNGNMMTNH DKSKESLSCF
501: LTMGKSTKSL EKSDDVKKHQ FLLFGQPILT EQQISSCSGD VLSHRKRSVS DDKDKAKCLM DDSQSTLSQQ FSPGKASSAE FSWQLGLDTG HCKVFLESED
601: VGRTLDLSLF GSYEDLYRRL AIMFGIERSE ILNHVLYHDA AGAAKKTGEE PFSDFMKTAK RLTILTDSSS KNIKRAFITG TRNGEHGLDA SNKTGPLSIF
701: A
101: SCCEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY TAEPPVQTVV AKDVHGETWR FRHIYRGTPR RHLLTTGWSS FVNQKKLVAG DSVVFLRAEN
201: GDLCVGIRRA KKGISEGSGS GSSSVWSSAS GSGNGNCGIG PYGPFSFFLK EENKMLRNGC GGNLSGRVKV RAEDVVEAVT LAASNKPFEV VYYPRASTPE
301: FCVKASAVRA AMRIQWCSGM RFKMAFETED ASRISWFMGT IASVQVVDPI RWPNSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNIPLI NFTPFSPPRK
401: KLRPQHPDFP LDVQFPIPMF SGNQLGPNSP LCGFSDNAPA GIQGARHAQF GKSLSDLHLN NKLQLGMLPT NIHQLGVYNE ISNGNMMTNH DKSKESLSCF
501: LTMGKSTKSL EKSDDVKKHQ FLLFGQPILT EQQISSCSGD VLSHRKRSVS DDKDKAKCLM DDSQSTLSQQ FSPGKASSAE FSWQLGLDTG HCKVFLESED
601: VGRTLDLSLF GSYEDLYRRL AIMFGIERSE ILNHVLYHDA AGAAKKTGEE PFSDFMKTAK RLTILTDSSS KNIKRAFITG TRNGEHGLDA SNKTGPLSIF
701: A
001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
Arabidopsis Description
ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.