Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G024100.1 | Barley | cytosol | 79.05 | 54.97 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 51.43 | 48.21 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 78.1 | 37.1 |
| HORVU6Hr1G070410.1 | Barley | cytosol | 31.43 | 33.67 |
| HORVU4Hr1G080510.1 | Barley | cytosol | 32.38 | 30.63 |
| HORVU5Hr1G054640.1 | Barley | cytosol | 30.48 | 28.83 |
| HORVU4Hr1G031990.1 | Barley | cytosol | 19.05 | 26.67 |
| Os04t0519700-01 | Rice | nucleus | 70.48 | 18.88 |
| HORVU1Hr1G049680.1 | Barley | cytosol | 16.19 | 15.89 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 84.76 | 12.54 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 82.86 | 12.29 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 82.86 | 12.18 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 60.0 | 10.99 |
| GSMUA_Achr11P... | Banana | nucleus | 60.0 | 10.43 |
| KRH34867 | Soybean | nucleus | 59.05 | 10.13 |
| KRG91907 | Soybean | nucleus | 57.14 | 10.12 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 60.0 | 10.11 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 58.1 | 10.05 |
| KRH22880 | Soybean | nucleus | 60.95 | 9.55 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 61.9 | 9.33 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 60.0 | 9.28 |
| CDX68620 | Canola | nucleus | 54.29 | 9.24 |
| CDY43553 | Canola | nucleus | 53.33 | 9.17 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 61.9 | 9.14 |
| KRH26435 | Soybean | nucleus | 60.0 | 9.0 |
| AT4G30080.1 | Thale cress | nucleus | 57.14 | 8.96 |
| KRH32480 | Soybean | nucleus | 59.05 | 8.86 |
| CDY15734 | Canola | nucleus | 57.14 | 8.82 |
| PGSC0003DMT400055522 | Potato | nucleus | 58.1 | 8.82 |
| Bra011162.1-P | Field mustard | nucleus | 54.29 | 8.81 |
| AT2G28350.1 | Thale cress | nucleus | 58.1 | 8.8 |
| Solyc09g007810.2.1 | Tomato | nucleus | 58.1 | 8.79 |
| Bra024109.1-P | Field mustard | nucleus | 58.1 | 8.79 |
| CDY04557 | Canola | nucleus | 57.14 | 8.76 |
| KRH29907 | Soybean | nucleus | 58.1 | 8.75 |
| KXG36152 | Sorghum | nucleus | 55.24 | 8.75 |
| KXG26729 | Sorghum | nucleus, plastid | 60.0 | 8.73 |
| KRG95987 | Soybean | nucleus | 58.1 | 8.71 |
| KRH25023 | Soybean | nucleus | 58.1 | 8.7 |
| Zm00001d025871_P001 | Maize | nucleus | 48.57 | 8.67 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 56.19 | 8.58 |
| Solyc10g086130.1.1 | Tomato | nucleus | 51.43 | 8.56 |
| Bra011955.1-P | Field mustard | nucleus | 57.14 | 8.51 |
| Solyc06g075150.2.1 | Tomato | nucleus | 54.29 | 8.49 |
| PGSC0003DMT400020874 | Potato | nucleus | 55.24 | 8.3 |
| Solyc11g069500.1.1 | Tomato | nucleus | 55.24 | 8.3 |
| PGSC0003DMT400062489 | Potato | nucleus | 52.38 | 8.14 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 58.1 | 8.04 |
| GSMUA_Achr11P... | Banana | nucleus | 40.95 | 7.95 |
| CDY30172 | Canola | nucleus | 58.1 | 7.35 |
| CDY46728 | Canola | nucleus | 57.14 | 7.11 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 36.19 | 6.8 |
| HORVU7Hr1G108360.1 | Barley | nucleus | 20.95 | 6.51 |
| HORVU3Hr1G072340.2 | Barley | nucleus | 40.0 | 6.19 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 29.52 | 5.97 |
| HORVU1Hr1G076690.6 | Barley | nucleus | 39.05 | 5.88 |
| HORVU1Hr1G087460.6 | Barley | mitochondrion, nucleus | 44.76 | 5.5 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 20.95 | 3.99 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 8.57 | 2.77 |
| HORVU6Hr1G026750.1 | Barley | cytosol, nucleus, plastid | 0.95 | 0.52 |
| TraesCS2A01G380300.1 | Wheat | nucleus | 0.95 | 0.25 |
| HORVU2Hr1G125740.1 | Barley | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G081710.1 | EnsemblPlantsGene:HORVU3Hr1G081710 | Gene3D:2.40.330.10 | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR015300 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF15 | SUPFAM:SSF101936 | UniParc:UPI000B47AE24 | UniProt:A0A287LXM8 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr3H:-:595827330..595828622
Molecular Weight (calculated)
11620.6 Da
IEP (calculated)
5.973
GRAVY (calculated)
-0.322
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: LAKIRLVPIR HGDPAVDVGD FAAEGRAEDD CPKPASFANT LTQSNANHDG GFSVPRFCIE TIFSALDYSS EPPLQSIIVR DVHGDEFKFR HIYRGTPLRH
101: LLTTD
101: LLTTD
001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
Arabidopsis Description
ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.