Factsheet for HORVU2Hr1G109650.18

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G017770.6
HORVU1Hr1G028170.4
HORVU2Hr1G076920.3
HORVU2Hr1G109650.18
HORVU3Hr1G019750.4
HORVU3Hr1G032230.6
HORVU3Hr1G070620.5
HORVU5Hr1G014290.1
HORVU5Hr1G014300.4
HORVU5Hr1G093580.2
HORVU5Hr1G093640.1
HORVU5Hr1G094220.1
HORVU5Hr1G106350.2
HORVU6Hr1G088140.2
HORVU7Hr1G026970.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19850.1	HORVU5Hr1G014300.4	AT1G04250.1	21734647
AT1G19850.1	HORVU5Hr1G093580.2	AT1G04250.1	21734647
AT1G19850.1	HORVU5Hr1G094220.1	AT1G04250.1	21734647
AT1G19850.1	HORVU2Hr1G109650.18	AT1G19850.1	14729917
AT1G19850.1	HORVU2Hr1G109650.18	AT1G19850.1	21734647
AT1G19850.1	HORVU2Hr1G109650.18	AT1G19850.1	22096563
AT1G19850.1	HORVU2Hr1G109650.18	AT1G19850.1	24485461
AT1G19850.1	HORVU2Hr1G076920.3	AT1G59750.1	22096563
AT1G19850.1	HORVU1Hr1G017770.6	AT3G17600.1	21734647
AT1G19850.1	HORVU5Hr1G014300.4	AT3G23050.1	21734647
AT1G19850.1	HORVU5Hr1G093580.2	AT3G23050.1	21734647
AT1G19850.1	HORVU5Hr1G094220.1	AT3G23050.1	21734647
AT1G19850.1	HORVU3Hr1G032230.6	AT3G61830.1	22096563
AT1G19850.1	HORVU5Hr1G014290.1	AT4G14560.1	14729917
AT1G19850.1	HORVU5Hr1G093640.1	AT4G14560.1	14729917
AT1G19850.1	HORVU5Hr1G106350.2	AT4G14560.1	14729917
AT1G19850.1	HORVU5Hr1G014290.1	AT4G14560.1	22096563
AT1G19850.1	HORVU5Hr1G093640.1	AT4G14560.1	22096563
AT1G19850.1	HORVU5Hr1G106350.2	AT4G14560.1	22096563
AT1G19850.1	HORVU5Hr1G014290.1	AT4G14560.1	9342315
AT1G19850.1	HORVU5Hr1G093640.1	AT4G14560.1	9342315
AT1G19850.1	HORVU5Hr1G106350.2	AT4G14560.1	9342315
AT1G19850.1	HORVU6Hr1G088140.2	AT4G32280.1	21734647
AT1G19850.1	HORVU7Hr1G026970.2	AT4G32280.1	21734647
AT1G19850.1	HORVU1Hr1G028170.4	AT5G25890.1	21734647
AT1G19850.1	HORVU3Hr1G019750.4	AT5G25890.1	21734647
AT1G19850.1	HORVU3Hr1G070620.5	AT5G25890.1	21734647
AT1G19850.1	HORVU1Hr1G028170.4	AT5G25890.1	22096563
AT1G19850.1	HORVU3Hr1G019750.4	AT5G25890.1	22096563
AT1G19850.1	HORVU3Hr1G070620.5	AT5G25890.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G519200.2	Wheat	nucleus	95.09	95.29
TraesCS2D01G491200.2	Wheat	nucleus	94.67	94.87
TraesCS2A01G491000.1	Wheat	nucleus	94.67	94.87
Os04t0664400-01	Rice	nucleus	76.07	79.13
EES13038	Sorghum	nucleus	77.22	78.12
Zm00001d026540_P002	Maize	nucleus	76.28	76.12
Zm00001d001945_P002	Maize	nucleus	73.56	74.26
Bra025775.1-P	Field mustard	nucleus	33.02	67.23
GSMUA_Achr1P20040_001	Banana	nucleus	44.93	54.99
GSMUA_Achr6P36980_001	Banana	nucleus	46.29	51.63
Bra016492.1-P	Field mustard	nucleus	41.17	47.13
CDY62586	Canola	nucleus	41.27	46.69
CDX83741	Canola	nucleus	41.17	46.57
CDY61164	Canola	nucleus	41.48	46.11
CDY01393	Canola	nucleus	41.59	46.01
Bra012190.1-P	Field mustard	nucleus	41.59	45.91
VIT_18s0001g13930.t01	Wine grape	nucleus	45.35	45.54
CDY29392	Canola	nucleus	41.59	45.43
CDY39348	Canola	nucleus	41.48	45.16
AT1G19850.1	Thale cress	nucleus	42.32	44.9
KRH17404	Soybean	nucleus	43.36	44.62
KRH05923	Soybean	nucleus	43.47	44.59
Solyc04g081240.2.1	Tomato	nucleus	42.84	44.09
GSMUA_Achr1P20000_001	Banana	nucleus	44.41	43.77
PGSC0003DMT400009660	Potato	nucleus	42.42	43.7
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	41.9	38.19
HORVU2Hr1G121110.32	Barley	nucleus	33.44	38.19
HORVU5Hr1G009650.20	Barley	nucleus	33.44	35.91
HORVU7Hr1G106280.1	Barley	nucleus	34.48	35.18
HORVU6Hr1G026730.9	Barley	nucleus	33.65	34.66
HORVU2Hr1G076920.3	Barley	nucleus	23.62	33.83
HORVU7Hr1G033820.5	Barley	nucleus	35.11	31.52
HORVU7Hr1G051930.4	Barley	nucleus	35.01	30.93
HORVU6Hr1G020330.30	Barley	nucleus	35.32	29.62
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	34.9	27.79
HORVU3Hr1G097200.10	Barley	nucleus	24.03	27.22
HORVU3Hr1G096410.4	Barley	nucleus, plastid	22.68	26.99
HORVU3Hr1G096510.3	Barley	plastid	23.09	26.5
HORVU3Hr1G032230.6	Barley	nucleus, plastid	21.73	26.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733
GO:GO:0009734	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009908	GO:GO:0009942
GO:GO:0009987	GO:GO:0010051	GO:GO:0010305	GO:GO:0016020	GO:GO:0042802	GO:GO:0044212
GO:GO:0048364	GO:GO:0048507	EnsemblPlantsGene:HORVU2Hr1G109650	EnsemblPlants:HORVU2Hr1G109650.18	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	UniProt:M0WWZ9	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF10	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI0002968D7E	SEG:seg	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:M0WWZ9]

Coordinates

chrchr2H:+:717608099..717612990

Molecular Weight (calculated)

105600.0 Da

IEP (calculated)

6.124

GRAVY (calculated)

-0.558

Length

957 amino acids

Sequence
(BLAST)

001: MAASQSQEKQ HLPAFGVLRN AAALLDEMQL MGEAQGAKKV INSELWHACA GPLVCLPQRG SLVYYFPQGH SEQVAATTKK TPNSRIPNYP SLPSQLLCQV
101: HNITMHADKD TDEVYAQMTL QPVNSETDVF PIQSLGSYAK SKHPAEYFCK NLTASDTSTH GGFSVPRRAA EKLFPQLVYD YSMQPPNQEL IVRDLHDNMW
201: TFRHIYRGQP KRHLLTTGWS LFVGAKRLKA GDSVLFIRDE KSQLLVGVRR ATNQQTALSS SVLSTDSMHI GVLAAAAHAA SSGSSFTIYY NPRTSPSPFV
301: VPMTRYNKAI YIQQSVGMRI AMMSETEESG KRRHTGTIVG VSDSDPMRWP NSKWRNLQVE WDEHEHGYGE RPERVSIWDI ETPENTIVLP SASLNSKRQC
401: LPGYGVPGLE VASANMSPFQ RAPGNPYGNL QHMPAVGSEL AMMMFLNQSG QNIGTPLSCH QSSYSSIIQN VKQNYMPPST YGHPIGSIKP ESMPSNEAQQ
501: QQLHAPKMQR GDSESCEVQP ATDSVSASEL HAAGREPRNT DKYPTQSISE QNCKGEPRVK PRRSKKGSSR KTISENSELS SAPSRVCDDQ QNVLEAKLVG
601: CGTEQVNCGN NEGSSAALTH GDFAGQLQCQ QVEQNELVSP PKLESSISPD GGKSVNSFPN QASFSQFFDG LDWMVQPPYY QDSNGMQSIS ASENIFSPSA
701: NMASTINTDT LETFQNSCLS DCFPNSIQDF IGSPDLHSLT FLSPEMQNLD VHNDGSNVPS TSNSYVQMSF SEDDSGNHME SIQRGMNNTS CSQPQATEGF
801: NLGMYSKLPS LKESQVLSLP EIHNSSRGTS SCSMDAAEYS IDRSAKPLKP PVRTYTKVQK LGSVGRSIDV TRYRDYRELR SAIASMFGLQ GKLEHPASSD
901: WKLVYVDYEN DVLLVGDDPW EEFINCVRCI RILSPSEVQQ MSENGMQVLN DCIQADQ

Best Arabidopsis Sequence Match ( AT1G19850.2 )
(BLAST)

001: MKTSCLVNGG GTITTTTSQS TLLEEMKLLK DQSGTRKPVI NSELWHACAG PLVCLPQVGS LVYYFSQGHS EQVAVSTRRS ATTQVPNYPN LPSQLMCQVH
101: NVTLHADKDS DEIYAQMSLQ PVHSERDVFP VPDFGMLRGS KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYSA QPPTQELVVR DLHENTWTFR
201: HIYRGQPKRH LLTTGWSLFV GSKRLRAGDS VLFIRDEKSQ LMVGVRRANR QQTALPSSVL SADSMHIGVL AAAAHATANR TPFLIFYNPR ACPAEFVIPL
301: AKYRKAICGS QLSVGMRFGM MFETEDSGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD EPGCNDKPTR VSPWDIETPE SLFIFPSLTS GLKRQLHPSY
401: FAGETEWGSL IKRPLIRVPD SANGIMPYAS FPSMASEQLM KMMMRPHNNQ NVPSFMSEMQ QNIVMGNGGL LGDMKMQQPL MMNQKSEMVQ PQNKLTVNPS
501: ASNTSGQEQN LSQSMSAPAK PENSTLSGCS SGRVQHGLEQ SMEQASQVTT STVCNEEKVN QLLQKPGASS PVQADQCLDI THQIYQPQSD PINGFSFLET
601: DELTSQVSSF QSLAGSYKQP FILSSQDSSA VVLPDSTNSP LFHDVWDTQL NGLKFDQFSP LMQQDLYASQ NICMSNSTTS NILDPPLSNT VLDDFCAIKD
701: TDFQNHPSGC LVGNNNTSFA QDVQSQITSA SFADSQAFSR QDFPDNSGGT GTSSSNVDFD DCSLRQNSKG SSWQKIATPR VRTYTKVQKT GSVGRSIDVT
801: SFKDYEELKS AIECMFGLEG LLTHPQSSGW KLVYVDYESD VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AGINDLKTSV S

Arabidopsis Description

ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.