Factsheet for HORVU2Hr1G076920.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G041770.1
HORVU2Hr1G076920.3
HORVU2Hr1G089660.8
HORVU2Hr1G089670.1
HORVU3Hr1G032230.6
HORVU3Hr1G081710.1
HORVU4Hr1G078490.1
HORVU5Hr1G024100.1
HORVU5Hr1G049880.1
HORVU6Hr1G058890.2
HORVU7Hr1G021880.1
HORVU7Hr1G101270.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	HORVU2Hr1G076920.3	AT1G59750.1	22096563
AT1G59750.1	HORVU2Hr1G076920.3	AT1G59750.1	24485461
AT1G59750.1	HORVU1Hr1G041770.1	AT2G28350.1	22096563
AT1G59750.1	HORVU2Hr1G089660.8	AT2G28350.1	22096563
AT1G59750.1	HORVU2Hr1G089670.1	AT2G28350.1	22096563
AT1G59750.1	HORVU3Hr1G081710.1	AT2G28350.1	22096563
AT1G59750.1	HORVU4Hr1G078490.1	AT2G28350.1	22096563
AT1G59750.1	HORVU5Hr1G024100.1	AT2G28350.1	22096563
AT1G59750.1	HORVU6Hr1G058890.2	AT2G28350.1	22096563
AT1G59750.1	HORVU7Hr1G021880.1	AT2G28350.1	22096563
AT1G59750.1	HORVU7Hr1G101270.1	AT2G28350.1	22096563
AT1G59750.1	HORVU5Hr1G049880.1	AT3G50060.1	17675404
AT1G59750.1	HORVU3Hr1G032230.6	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G326400.1	Wheat	nucleus	95.21	97.25
TraesCS2D01G307600.1	Wheat	nucleus	94.76	96.79
TraesCS2A01G309300.1	Wheat	nucleus	94.61	96.64
Os04t0442000-01	Rice	nucleus	80.84	80.24
EES10850	Sorghum	nucleus	77.99	78.82
Zm00001d003601_P006	Maize	nucleus	75.9	74.34
GSMUA_Achr9P08310_001	Banana	vacuole	47.46	65.09
GSMUA_Achr10P...	Banana	nucleus	63.17	62.61
KRH26266	Soybean	nucleus	61.68	61.95
VIT_18s0089g00910.t01	Wine grape	nucleus	59.73	61.48
PGSC0003DMT400053380	Potato	nucleus	60.03	61.31
KRH06026	Soybean	nucleus	60.93	61.2
Solyc01g103050.2.1	Tomato	nucleus	59.73	61.01
GSMUA_Achr6P07390_001	Banana	nucleus	59.73	60.92
VIT_12s0035g01800.t01	Wine grape	nucleus	61.83	60.91
CDY27291	Canola	nucleus	55.99	60.42
GSMUA_Achr6P12780_001	Banana	nucleus	62.87	60.34
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	62.72	60.11
KRH51289	Soybean	nucleus	60.03	59.5
AT1G59750.1	Thale cress	nucleus	57.93	58.2
CDY65065	Canola	nucleus	56.59	57.19
CDY33603	Canola	nucleus	56.59	57.19
Bra035427.1-P	Field mustard	nucleus	56.89	57.14
HORVU3Hr1G097200.10	Barley	nucleus	46.11	36.45
HORVU3Hr1G096410.4	Barley	nucleus, plastid	41.47	34.45
HORVU3Hr1G032230.6	Barley	nucleus, plastid	41.17	34.38
HORVU3Hr1G096510.3	Barley	plastid	42.07	33.69
HORVU2Hr1G121110.32	Barley	nucleus	36.53	29.12
HORVU6Hr1G026730.9	Barley	nucleus	37.13	26.7
HORVU7Hr1G106280.1	Barley	nucleus	37.13	26.44
HORVU5Hr1G009650.20	Barley	nucleus	35.18	26.37
HORVU2Hr1G109650.18	Barley	nucleus	33.83	23.62
HORVU6Hr1G020330.30	Barley	nucleus	37.43	21.91
HORVU7Hr1G033820.5	Barley	nucleus	34.73	21.76
HORVU7Hr1G051930.4	Barley	nucleus	35.18	21.7
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	35.48	19.72

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A287IIK1	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733
GO:GO:0009734	GO:GO:0009987	GO:GO:0010150	GO:GO:0042802	GO:GO:0045892	EnsemblPlantsGene:HORVU2Hr1G076920
EnsemblPlants:HORVU2Hr1G076920.3	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF24
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000B47F04A	SEG:seg	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287IIK1]

Coordinates

chrchr2H:+:556102235..556107144

Molecular Weight (calculated)

73945.2 Da

IEP (calculated)

5.997

GRAVY (calculated)

-0.425

Length

668 amino acids

Sequence
(BLAST)

001: AEPAAASTLA MAAAMHMPNP SAAGAPGIFS DALFRELWHA CAGPLITVPR QGERVYYFPQ GHMEQLEAST NQQLDQYLPM FNLPSKILCS VVNVELRTEA
101: DSDEVYAQIM LQPEAKQDEL TSLGPEPQEL EKGTIHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMS QNPPCQELVA KDLHGTEWHF RHIFRGQPRR
201: HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRHM RQVNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS VNKYLEAKKQ
301: NTSVGMRFKM KFEGDEALER RFSGTIIGIG STPTMSTSPW ADSDWKSLKV QWDEPSSILR PDRVSPWELE PLDAANPQPP QPPLRNKRPR LPASPSVVPE
401: LAPKFGLWKS PAEPSQTLSF SEPQQARGLF TNSRFSSSSN VAFNQFYWPA RESREDSYAA STNKATVERK LEPATGGCRL FGIEIRSAVE ETQPVVTVSG
501: DGYDQTAASV DVDSGELSQP SNINNSGAQA ASSERALLDT QTRQVRSCTK VIMTGMAVGR AVDLTKLYGY VDLHRKLEEM FDIQGELCST LKKWQVVYAD
601: EEDDMMLVGD DPWDEFCSMA KRIYIFTYEE AKQLAPKATK LSRVNSSHES VAPQSGSDYP ASFANADC

Best Arabidopsis Sequence Match ( AT1G59750.4 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.