CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88840
EER94066
EER98550
EES02172
EES05458
EES06968
EES10850
KXG26729
KXG36152

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	EES06968	AT1G59750.1	22096563
AT1G59750.1	EES10850	AT1G59750.1	22096563
AT1G59750.1	EES06968	AT1G59750.1	24485461
AT1G59750.1	EES10850	AT1G59750.1	24485461
AT1G59750.1	EER88840	AT2G28350.1	22096563
AT1G59750.1	EER94066	AT2G28350.1	22096563
AT1G59750.1	EES05458	AT2G28350.1	22096563
AT1G59750.1	KXG26729	AT2G28350.1	22096563
AT1G59750.1	KXG36152	AT2G28350.1	22096563
AT1G59750.1	EER98550	AT3G50060.1	17675404
AT1G59750.1	EES02172	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003601_P006	Maize	nucleus	93.95	91.06
Os04t0442000-01	Rice	nucleus	82.15	80.68
TraesCS2D01G307600.1	Wheat	nucleus	78.21	79.05
TraesCS2B01G326400.1	Wheat	nucleus	78.21	79.05
TraesCS2A01G309300.1	Wheat	nucleus	78.21	79.05
HORVU2Hr1G076920.3	Barley	nucleus	78.82	77.99
EES06968	Sorghum	nucleus	75.49	74.26
GSMUA_Achr9P08310_001	Banana	vacuole	49.47	67.15
PGSC0003DMT400053380	Potato	nucleus	63.84	64.53
GSMUA_Achr10P...	Banana	nucleus	65.51	64.24
Solyc01g103050.2.1	Tomato	nucleus	63.24	63.91
KRH26266	Soybean	nucleus	62.93	62.56
VIT_12s0035g01800.t01	Wine grape	nucleus	63.84	62.24
KRH06026	Soybean	nucleus	62.48	62.11
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	65.36	61.98
GSMUA_Achr6P07390_001	Banana	nucleus	61.27	61.83
GSMUA_Achr6P12780_001	Banana	nucleus	65.05	61.78
VIT_18s0089g00910.t01	Wine grape	nucleus	60.36	61.48
CDY27291	Canola	nucleus	56.73	60.58
KRH51289	Soybean	nucleus	60.97	59.79
AT1G59750.1	Thale cress	nucleus	59.61	59.25
CDY65065	Canola	nucleus	58.25	58.25
Bra035427.1-P	Field mustard	nucleus	58.55	58.2
CDY33603	Canola	nucleus	58.09	58.09
EES02172	Sorghum	nucleus	42.51	40.84
KXG34038	Sorghum	nucleus	47.96	39.14
OQU83539	Sorghum	nucleus	47.5	38.53
EES17013	Sorghum	nucleus	48.87	38.5
KXG27404	Sorghum	nucleus	35.7	28.82
EER90218	Sorghum	nucleus	37.97	27.31
EES04575	Sorghum	nucleus	37.07	26.89
EES17392	Sorghum	nucleus	36.16	26.7
EES13038	Sorghum	nucleus	33.43	23.36
KXG19536	Sorghum	nucleus	35.25	22.13
EES15359	Sorghum	nucleus	36.61	22.1
OQU84350	Sorghum	nucleus	33.13	20.47
EER90336	Sorghum	nucleus	35.55	20.28

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:8080341	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:C5Y8U9	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES10850	ProteinID:EES10850
ProteinID:EES10850.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF24	SMART:SM01019	EnsemblPlantsGene:SORBI_3006G089500	SUPFAM:SSF101936
SUPFAM:SSF54277	unigene:Sbi.6549	UniParc:UPI0001A86D34	RefSeq:XP_002446522.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:45934300..45941915

Molecular Weight (calculated)

73205.6 Da

IEP (calculated)

6.056

GRAVY (calculated)

-0.423

Length

661 amino acids

Sequence
(BLAST)

001: MAAAMDAPNP AAAAGSGGMP SDALYRELWH ACAGPLVTVP RQGERVYYFP QGHMEQLEAS THQQLDQYLP MFNLPPKILC SVVNVELRAE ADSDEVYAQI
101: MLQPEADQNE LTSLDPEPQE PEKCTAHSFC KTLTASDTST HGGFSVLRRH AEECLPQLDM SLNPPCQELV AKDLHGTEWH FRHIFRGQPK RHLLTTGWSV
201: FVSSKRLVAG DAFIFMRGEN GELRVGVRRL MRQVNSMPSS VISSHSMHLG VLATASHAIS TGTLFSVFYK PRTSRSDFIV SVNKYLEAKK QKISVGMRFK
301: MRFEGDEAPE RRFSGTIIGI GSLPAMSKSL WADSDWRSLK VQWDEPSSIL RPDRISPWEV EPLDAANPQS PQPPPRPKRP RPPASPCMVS ELPSGFGLWK
401: SPTESSRTLS FSEPQRAREL FPSIPTSTFS SSSNVSFNSK NEPSMLTTQF YWSARDTRAD SCAASTNTVI VEKKQEPSSG GCRLFGIDIC SAEEEVLPVV
501: TAPGVGYEQT AASVELNSDK LSQGSDVNNS DAPAASSERS PLESQSRQVR SCTKVIMQGM AVGRAVDLTK LSGYSDLCQK LEEMFDIHGE LGCTLKKWRV
601: IFTDDEDDMM LVGDDPWDEF CRMVKRIYIY TYEEAKKLTS KSKLPVSSDS SKLSAVNSLS E

Best Arabidopsis Sequence Match ( AT1G59750.2 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPD GVWKSPADTP
401: SSVPLFSPPA KAATFGHGGN KSFGVSIGSA FWPTNADSAA ESFASAFNNE STEKKQTNGN VCRLFGFELV ENVNVDECFS AASVSGAVAV DQPVPSNEFD
501: SGQQSEPLNI NQSDIPSGSG DPEKSSLRSP QESQSRQIRS CTKVHMQGSA VGRAIDLTRS ECYEDLFKKL EEMFDIKGEL LESTKKWQVV YTDDEDDMMM
601: VGDDPWNEFC GMVRKIFIYT PEEVKKLSPK NKLAVNARMQ LKADAEENGN TEGRSSSMAG SR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.