CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88840
EER94066
EER98550
EES02172
EES05458
EES06968
EES10850
KXG26729
KXG36152

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	EES06968	AT1G59750.1	22096563
AT1G59750.1	EES10850	AT1G59750.1	22096563
AT1G59750.1	EES06968	AT1G59750.1	24485461
AT1G59750.1	EES10850	AT1G59750.1	24485461
AT1G59750.1	EER88840	AT2G28350.1	22096563
AT1G59750.1	EER94066	AT2G28350.1	22096563
AT1G59750.1	EES05458	AT2G28350.1	22096563
AT1G59750.1	KXG26729	AT2G28350.1	22096563
AT1G59750.1	KXG36152	AT2G28350.1	22096563
AT1G59750.1	EER98550	AT3G50060.1	17675404
AT1G59750.1	EES02172	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050781_P001	Maize	nucleus	86.46	92.22
Os02t0557200-01	Rice	nucleus	84.97	84.22
EES10850	Sorghum	nucleus	74.26	75.49
GSMUA_Achr9P08310_001	Banana	vacuole	50.15	69.2
GSMUA_Achr10P...	Banana	nucleus	67.56	67.36
PGSC0003DMT400053380	Potato	nucleus	64.88	66.67
KRH26266	Soybean	nucleus	65.48	66.17
GSMUA_Achr6P07390_001	Banana	nucleus	64.43	66.11
Solyc01g103050.2.1	Tomato	nucleus	64.29	66.06
VIT_12s0035g01800.t01	Wine grape	nucleus	66.22	65.63
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	68.01	65.57
GSMUA_Achr6P12780_001	Banana	nucleus	67.86	65.52
KRH06026	Soybean	nucleus	64.58	65.26
VIT_18s0089g00910.t01	Wine grape	nucleus	61.16	63.33
KRH51289	Soybean	nucleus	62.95	62.76
CDY27291	Canola	nucleus	56.99	61.87
AT1G59750.1	Thale cress	nucleus	59.67	60.3
CDY65065	Canola	nucleus	58.93	59.91
Bra035427.1-P	Field mustard	nucleus	59.23	59.85
CDY33603	Canola	nucleus	58.78	59.76
EES02172	Sorghum	nucleus	42.56	41.57
KXG34038	Sorghum	nucleus	48.81	40.49
EES17013	Sorghum	nucleus	49.85	39.93
OQU83539	Sorghum	nucleus	47.17	38.9
KXG27404	Sorghum	nucleus	36.31	29.79
EES17392	Sorghum	nucleus	37.35	28.04
EER90218	Sorghum	nucleus	37.65	27.53
EES04575	Sorghum	nucleus	36.76	27.11
EES13038	Sorghum	nucleus	34.82	24.74
KXG19536	Sorghum	nucleus	36.01	22.98
EES15359	Sorghum	nucleus	36.31	22.28
EER90336	Sorghum	nucleus	36.76	21.31
OQU84350	Sorghum	nucleus	33.78	21.21

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:8068888	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:C5XUU5	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES06968	ProteinID:EES06968
ProteinID:EES06968.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF69	SMART:SM01019	EnsemblPlantsGene:SORBI_3004G178500	SUPFAM:SSF101936
SUPFAM:SSF54277	unigene:Sbi.10485	UniParc:UPI0001A85C78	RefSeq:XP_002453992.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:53078768..53084929

Molecular Weight (calculated)

74934.1 Da

IEP (calculated)

6.216

GRAVY (calculated)

-0.579

Length

672 amino acids

Sequence
(BLAST)

001: MADAGVARGP GSAGDALFRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ HLPLFNLPPK ILCKVVNVEL RAETDSDEVY AQIMLQPEAE
101: QNEPTSPDAE PPEPERCNVH SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMTQNPPWQ ELVAKDLHGN EWHFRHIFRG QPRRHLLTTG WSVFVSSKRL
201: VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNHKMSVGM RFKMRFEGDE
301: SPERRFSGTI IGLGSMPANS TSPWANSEWR SLKVQWDEPS AILRPDRVSP WELEPLDATN PQPPQPPLRN KRARPPASPS IAPELPPVFG FWKSPAEPAQ
401: AFSFSGLQRT QELYHSNPNS IFSSSLNVGF NSKNERSTPN NNHLYWTMRE TRTESYSASI NKAPTEKKQE SATSGCRLFG IEIGSAVSPV VTVASVGQDP
501: PPALSVDVES DQLSQPSHAN KTDAPAASSE RSPNETESRQ VRSCTKVIMQ GMAVGRAVDL TRLDGYDDLH RKLEEMFDIH GELSANLRKW KVVYTDDEDD
601: MMLVGDDPWN EFCRMVKRIY IYSYEEAKSL TPKAKLPVIG DTIKPDPNKL SPESDMPQSD TNSNAPVAAD KD

Best Arabidopsis Sequence Match ( AT1G59750.4 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.