CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031064_P003	Maize	nucleus	95.53	95.32
Zm00001d041497_P005	Maize	nucleus	92.96	93.69
KRH58711	Soybean	nucleus	38.1	86.77
Os12t0613700-01	Rice	nucleus	80.11	79.76
TraesCS5B01G039800.1	Wheat	nucleus	79.22	79.57
HORVU5Hr1G009650.20	Barley	nucleus	79.11	79.46
TraesCS5A01G038300.2	Wheat	nucleus	79.78	79.42
TraesCS5D01G045700.2	Wheat	nucleus	79.22	78.78
VIT_10s0003g04100.t01	Wine grape	nucleus	64.69	63.77
CDY02285	Canola	nucleus	61.56	63.12
Bra010776.1-P	Field mustard	nucleus	58.55	62.98
GSMUA_Achr5P26580_001	Banana	nucleus	56.76	62.95
CDY12048	Canola	nucleus	59.55	62.93
CDX90245	Canola	nucleus	59.89	62.91
GSMUA_Achr3P23290_001	Banana	nucleus	57.43	62.68
CDY09598	Canola	nucleus	60.34	62.07
KRH21113	Soybean	nucleus	62.12	62.05
KRH11131	Soybean	nucleus	61.34	61.14
EER90218	Sorghum	nucleus	62.57	60.94
AT1G30330.3	Thale cress	nucleus	63.46	60.75
EES04575	Sorghum	nucleus	61.56	60.48
KRH42603	Soybean	nucleus	61.12	60.44
GSMUA_Achr11P...	Banana	nucleus	61.34	60.13
KXG27404	Sorghum	nucleus	53.63	58.61
KXG19536	Sorghum	nucleus	45.7	38.84
EES06968	Sorghum	nucleus	28.04	37.35
EES10850	Sorghum	nucleus	26.7	36.16
EES13038	Sorghum	nucleus	36.98	34.99
EES15359	Sorghum	nucleus	40.11	32.79
EER90336	Sorghum	nucleus	42.35	32.7
OQU84350	Sorghum	nucleus	38.66	32.34
EES17013	Sorghum	nucleus	29.72	31.7
KXG34038	Sorghum	nucleus	28.16	31.11
EES02172	Sorghum	nucleus	23.91	31.1
OQU83539	Sorghum	nucleus	28.04	30.8

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:8070167	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:C5YRZ9	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES17392	ProteinID:EES17392
ProteinID:EES17392.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF67	SMART:SM01019	EnsemblPlantsGene:SORBI_3008G169400	SUPFAM:SSF101936
SUPFAM:SSF54277	unigene:Sbi.14947	UniParc:UPI0001A88240	RefSeq:XP_002443554.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:60367853..60373737

Molecular Weight (calculated)

98615.0 Da

IEP (calculated)

5.923

GRAVY (calculated)

-0.409

Length

895 amino acids

Sequence
(BLAST)

001: MNLSPPKMSE PSPESDGEQR CLNSELWHAC AGPLVSLPVV GSRVVYFPQG HSEQVAASTN KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETEEVYAQMT
101: LQPLSPEEQK EPFLPIELGA GSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPVQELV ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP LTTFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL
401: MWLRDGNRGA QSLNFQGLGA SPWLQPRIDY PLMGLKPDTY QQMAAAALEE IRAGDHLKQT SSLLPVQQTQ NLNGGLDPLY GNPVLQQMQF QSQQSPLQAV
501: QQGYGQNASE SGFLQNQLQQ LQLQKQQEPP QQQQQQTQVL QQQSHQEMQQ HLSASCHDIA NVASGVSESG SACQSQSSLL SGSSFYQQNL FDGNNGPDLH
601: LHNSFHNFSS QESSNLLNLP RSGQLMASEG WPSKRLAVES LAGHELQPVQ LKLEKVNHQS NVSHVSGTLP PLSARDGSSA QACGTNVQSN LLSSSFAIHD
701: GLSTVRSGGV GSGTDAITIA SLRYGDMNLL PENSIATSSC LGESGTFNSL DDVCGVNPSQ GGTFVKVYKS GSLGRSLDIT RFSSYYELRS ELERLFGLEG
801: QLEDPVRSGW QLVFVDREND ILLVGDDPWQ EFVNSVWCIK ILSPQDVQQM VRGGGDLLSA PGARMLQSSV CDDYSAGHDM QNLTGIIAPV VPLDY

Best Arabidopsis Sequence Match ( AT1G30330.2 )
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.