Factsheet for TraesCS5B01G039800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G038300.2	Wheat	nucleus	98.77	97.89
TraesCS5D01G045700.2	Wheat	nucleus	98.32	97.33
HORVU5Hr1G009650.20	Barley	nucleus	96.97	96.97
KRH58711	Soybean	nucleus	38.27	86.77
EES17392	Sorghum	nucleus	79.57	79.22
Os12t0613700-01	Rice	nucleus	79.24	78.53
Zm00001d031064_P003	Maize	nucleus	77.78	77.26
Zm00001d041497_P005	Maize	nucleus	76.88	77.14
GSMUA_Achr5P26580_001	Banana	nucleus	57.35	63.32
GSMUA_Achr3P23290_001	Banana	nucleus	58.02	63.05
VIT_10s0003g04100.t01	Wine grape	nucleus	63.52	62.33
KRH11131	Soybean	nucleus	61.62	61.14
KRH21113	Soybean	nucleus	61.17	60.83
CDY02285	Canola	nucleus	59.48	60.71
TraesCS7B01G363100.1	Wheat	nucleus	61.62	60.4
CDY12048	Canola	nucleus	57.24	60.21
Bra010776.1-P	Field mustard	nucleus	56.12	60.1
CDX90245	Canola	nucleus	57.46	60.09
KRH42603	Soybean	nucleus	60.72	59.78
GSMUA_Achr11P...	Banana	nucleus	61.17	59.69
CDY09598	Canola	nucleus	58.25	59.66
TraesCS6B01G167100.1	Wheat	nucleus	61.5	59.12
AT1G30330.3	Thale cress	nucleus	61.05	58.18
TraesCS2B01G578500.1	Wheat	nucleus	51.52	55.1
TraesCS7B01G065800.2	Wheat	plastid	45.23	37.28
TraesCS2B01G326400.1	Wheat	nucleus	26.37	35.93
TraesCS2B01G519200.2	Wheat	nucleus	36.48	34.03
TraesCS6B01G141300.2	Wheat	nucleus	41.75	32.89
TraesCS7B01G138900.6	Wheat	nucleus	39.84	32.45
TraesCS3B01G475800.1	Wheat	nucleus	28.96	32.41
TraesCS7B01G316600.1	Wheat	nucleus	41.64	31.6
TraesCS3B01G486000.2	Wheat	nucleus	28.96	31.23
TraesCS3B01G190100.1	Wheat	nucleus	25.14	29.55

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF67
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	EnsemblPlantsGene:TraesCS5B01G039800	EnsemblPlants:TraesCS5B01G039800.1	TIGR:cd10017
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:44776574..44782790

Molecular Weight (calculated)

98346.4 Da

IEP (calculated)

6.145

GRAVY (calculated)

-0.475

Length

891 amino acids

Sequence
(BLAST)

001: MERKLSMSEM PQSLPENDGE QRCLNSELWH ACAGPLVSLP AVGSRVIYFP QGHSEQVAAS TNKEVDAQIP NYPNLPPQLI CQLHNVTMHA DAETDEVYAQ
101: MTLQPLSPEE QKEPFLPIEL GAASKQPTNY FCKTLTASDT STHGGFSVPR RSAEKVFPPL DFSLQPPCQE LIAKDLHDNE WKFRHIFRGQ PKRHLLTTGW
201: SVFVSAKRLV AGDSVIFIWN DNNQLLLGIR HANRPQTIMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF IIPLAKYVKS VYHTRVSVGM
301: RFRMLFETEE SSVRRYMGTI TTISDLDSVR WPNSHWRSVK VGWDESTAGE KQPRVSLWEI EPLTTFPMYP TAFPLRLKRP WASGLPSMHG MFNGVKNDDF
401: ARYSSLMWLG DGDRGAQSLN FQGVGASPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRTG DPSKQSSALL QFQQTQNPNG GLNSVYANHV LQQMQYQAQQ
501: SSLQTVQHGH SQYSGNPGFL QSQFQQLHLH NPPAPPQQGY QVIQQSHQEM QQQLSSGCRR ISDVDSSMPG SESASQSQSS FYQQNLLEGN NDPSLHLHNG
601: FRNFSSQDSS NLVSLPRTDQ LMAPEGWPSK RLAVEPLGHI ESRSMQPKHE NINHQSNMSH FAGTLAPQSA RDSSSVQAYG ANADNQFLSS TFAFQDGMAG
701: ARGGSSSGTV SMAIPLLRYS GEDLPPADTL ATSSCLGESG TFNSLDNMCG VNPSQDGTFV KVYKSGSPGR SLDITKFSSY YELRSELEHL FGLEGQLEDP
801: VRSGWQLVFV DRENDILLVG DDPWQEFVNS VGCIKILSQQ EVQQMVRGGE GLVSSAPGAR MAQGNVCDGY SGGHDLQNLT GNMASVPPLD Y

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.