Factsheet for Os12t0613700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58711	Soybean	nucleus	38.15	87.28
EES17392	Sorghum	nucleus	79.76	80.11
TraesCS5B01G039800.1	Wheat	nucleus	78.53	79.24
TraesCS5A01G038300.2	Wheat	nucleus	78.64	78.64
HORVU5Hr1G009650.20	Barley	nucleus	77.86	78.56
Zm00001d031064_P003	Maize	nucleus	77.86	78.04
TraesCS5D01G045700.2	Wheat	nucleus	77.98	77.89
Zm00001d041497_P005	Maize	nucleus	76.75	77.7
GSMUA_Achr3P23290_001	Banana	nucleus	59.18	64.88
GSMUA_Achr5P26580_001	Banana	nucleus	57.4	63.94
VIT_10s0003g04100.t01	Wine grape	nucleus	63.63	63.0
CDY02285	Canola	nucleus	60.4	62.2
Os06t0677800-01	Rice	nucleus	62.96	61.72
Os02t0164900-01	Rice	nucleus	62.29	61.67
GSMUA_Achr11P...	Banana	nucleus	62.29	61.34
Bra010776.1-P	Field mustard	nucleus	56.73	61.3
CDY12048	Canola	nucleus	57.73	61.28
KRH21113	Soybean	nucleus	61.07	61.27
CDX90245	Canola	nucleus	57.95	61.15
CDY09598	Canola	nucleus	59.18	61.15
KRH11131	Soybean	nucleus	60.96	61.02
KRH42603	Soybean	nucleus	60.29	59.89
AT1G30330.3	Thale cress	nucleus	62.07	59.68
Os04t0671900-01	Rice	nucleus	52.61	57.82
Os11t0523800-01	Rice	nucleus	20.24	49.73
Os08t0520550-01	Rice	nucleus	31.48	44.43
Os06t0196700-02	Rice	nucleus	45.61	38.86
Os06t0702600-01	Rice	nucleus	42.38	38.45
Os02t0557200-01	Rice	nucleus	27.36	36.28
Os04t0442000-01	Rice	nucleus	27.03	36.11
Os04t0664400-01	Rice	nucleus	35.15	34.35
Os02t0141100-00	Rice	nucleus	41.27	33.24
Os01t0927600-01	Rice	nucleus	29.37	32.67
Os08t0520500-01	Rice	cytosol	1.78	32.0
Os01t0236300-01	Rice	nucleus	24.03	30.9
Os12t0479400-02	Rice	nucleus	28.81	30.8

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:4352783	EMBL:AB071295
ProteinID:ABA99400.1	EMBL:AK121703	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAF30285.1
ProteinID:BAT18068.1	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	ProteinID:EAZ21209.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlantsGene:Os12g0613700	EnsemblPlants:Os12t0613700-01
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF67	UniProt:Q2QM84	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI0000680C37	RefSeq:XP_015619766.1	SEG:seg	:	:	:

Description

AUXIN RESPONSE FACTOR 6BTranscriptional factor B3 family protein. (Os12t0613700-01);Similar to Auxin response factor 25. (Os12t0613700-02)

Coordinates

chr12:-:26002370..26008343

Molecular Weight (calculated)

99867.4 Da

IEP (calculated)

6.287

GRAVY (calculated)

-0.469

Length

899 amino acids

Sequence
(BLAST)

001: MKLSPPASAD MPQALPENDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA
101: QMTLQPLSPE EQKEPFLPME LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG
201: WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRQQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG
301: MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSHWRSV KVGWDESTTG DKQPRVSLWE IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF
401: ARYSSLMWLR DGNRGTQSLN FQGHGVSPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRYG DPSKQHPATL QYQQTHNLNS GLNSLFASHV LGQVQFQPQQ
501: SPLQVVQQGH CQNTGDSGFL QGQLPRLQLH NTQQLLKEQE LQQQQRQHVL QEQSSQEMQQ QLPSSDHHVA DVASESGSAP QAQSSLLSGS SFYNQNLLEG
601: NSDPPLHLHN NFHNFSNQEA SNLLILPRSS QLMASDGWPS KRLTLESAVH PEAPSMHPKI EKVNHQGISH FPGAFPPQSA RGCSIVQDCR ADAENRLLSS
701: SFELQDGMTS IITDANRETD TMAIPLLRYS GADLTTENTL ATSNCLGESG TFNPLNNISV NPSQGATFVK VYKSGSLGRS LDISRFSSYC ELRSELERLF
801: GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFANSV WCIKILSPQE VQQLVRGGDG LLSSPGARMQ QSNACDDYSA SHNMQNIAGN IASVAPLDY

Best Arabidopsis Sequence Match ( AT1G30330.2 )
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.