Factsheet for Os06t0677800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90218	Sorghum	nucleus	90.95	90.75
Zm00001d014377_P002	Maize	nucleus	88.88	88.88
TraesCS7B01G363100.1	Wheat	nucleus	87.68	88.45
TraesCS7D01G449900.2	Wheat	nucleus	87.57	88.44
TraesCS7A01G461700.1	Wheat	nucleus	87.57	88.34
KRH58711	Soybean	nucleus	37.84	88.3
HORVU7Hr1G106280.1	Barley	nucleus	88.11	86.14
Os02t0164900-01	Rice	nucleus	83.86	84.69
Zm00001d036593_P001	Maize	plastid	87.35	83.44
GSMUA_Achr5P00590_001	Banana	nucleus	70.45	71.07
GSMUA_Achr11P...	Banana	nucleus	63.58	70.33
VIT_10s0003g04100.t01	Wine grape	nucleus	68.59	69.27
GSMUA_Achr6P19850_001	Banana	nucleus	63.69	68.3
KRH11131	Soybean	nucleus	64.89	66.26
KRH21113	Soybean	nucleus	64.67	66.18
CDY02285	Canola	nucleus	62.38	65.52
CDY12048	Canola	nucleus	60.2	65.17
Bra010776.1-P	Field mustard	nucleus	59.11	65.14
CDX90245	Canola	nucleus	60.41	65.02
CDY09598	Canola	nucleus	61.5	64.83
KRH42603	Soybean	nucleus	63.36	64.2
Os12t0613700-01	Rice	nucleus	61.72	62.96
AT1G30330.3	Thale cress	nucleus	63.9	62.67
Os04t0671900-01	Rice	nucleus	54.09	60.64
Os11t0523800-01	Rice	nucleus	19.74	49.45
Os08t0520550-01	Rice	nucleus	31.62	45.53
Os06t0196700-02	Rice	nucleus	47.76	41.52
Os06t0702600-01	Rice	nucleus	42.64	39.46
Os02t0557200-01	Rice	nucleus	28.14	38.05
Os04t0442000-01	Rice	nucleus	27.59	37.59
Os08t0520500-01	Rice	cytosol	1.96	36.0
Os04t0664400-01	Rice	nucleus	35.77	35.65
Os02t0141100-00	Rice	nucleus	43.29	35.57
Os01t0927600-01	Rice	nucleus	29.12	33.04
Os12t0479400-02	Rice	nucleus	29.33	31.99
Os01t0236300-01	Rice	nucleus	23.99	31.47

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:4341841	EMBL:AK103280
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAD45527.1	ProteinID:BAD45924.1	ProteinID:BAF20274.1
ProteinID:BAS99119.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EnsemblPlantsGene:Os06g0677800	EnsemblPlants:Os06t0677800-01	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF22
UniProt:Q653U3	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000043A307	RefSeq:XP_015643843.1
SEG:seg	:	:	:	:	:

Description

AUXIN RESPONSE FACTOR 17Similar to P-167-1_1 (Fragment). (Os06t0677800-01)

Coordinates

chr6:-:28158519..28164557

Molecular Weight (calculated)

101788.0 Da

IEP (calculated)

6.211

GRAVY (calculated)

-0.491

Length

917 amino acids

Sequence
(BLAST)

001: MRLSSSSGSV LPAQAASPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV
101: YAQMTLQPLS PQELKDPYLP AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH GNEWKFRHIF RGQPKRHLLT
201: TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLSKY VKAVYHTRIS
301: VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT
401: SSLMWLRDSA NPGFQSLNFG GLGMNPWMQP RFDASLLGLQ PDMYQTIAAT AFQDPTKQVS PTILQFQQPQ NIGGRANTLL PSQILQQVQP QFQQQQYLQN
501: INETTIQGHA QSEFLQQQLQ RCQSFTEQKP QLQTQQQQQE SQQQQQQQSQ CMQVPQHQQM QQQKNMTNYQ SVPNALSPFS QLSSPSQSSP MTLQTVLPFS
601: QPQSYPDTSM SSLSPSNTST MHNALRPFSS EAPSHLSMPR PTAVPVPDPW SSKRVAVESL LPSRPQVTSQ MEQLDSTAPS IPQSSALAPL PGRGCLVDQD
701: GNSDPQNHLL FGVNIDSQSL LMQGGIPSLQ GENDSTAIPY STSNFLSPSQ NDFPLDQTLS SADCLDESGY VPCSQNSDQV INRPPATFVK VYKSGTYGRS
801: LDITRFSSYH ELRRELGRLF GLEGQLENPL RSGWQLVFVD REDDVLLVGD DPWQEFVNSV SCIKILSPQE VQQMGKPFEL LSSAPGKRLG SSCDDYVSRQ
901: ESRSLSTGIA SVGSVEF

Best Arabidopsis Sequence Match ( AT1G30330.2 )
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.