Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58711 | Soybean | nucleus | 40.47 | 88.04 |
| GSMUA_Achr8P13630_001 | Banana | cytosol, nucleus, plastid | 27.37 | 78.26 |
| GSMUA_Achr11P... | Banana | nucleus | 72.75 | 75.03 |
| GSMUA_Achr5P00590_001 | Banana | nucleus | 78.36 | 73.71 |
| GSMUA_Achr3P23290_001 | Banana | nucleus | 67.37 | 70.24 |
| GSMUA_Achr5P26580_001 | Banana | nucleus | 65.26 | 69.14 |
| GSMUA_Achr5P02450_001 | Banana | nucleus | 65.96 | 68.12 |
| GSMUA_Achr11P... | Banana | nucleus | 70.88 | 66.37 |
| VIT_10s0003g04100.t01 | Wine grape | nucleus | 69.47 | 65.42 |
| Os06t0677800-01 | Rice | nucleus | 68.3 | 63.69 |
| Os02t0164900-01 | Rice | nucleus | 67.13 | 63.22 |
| KRH11131 | Soybean | nucleus | 66.32 | 63.14 |
| KRH21113 | Soybean | nucleus | 65.73 | 62.72 |
| TraesCS7B01G363100.1 | Wheat | nucleus | 66.67 | 62.71 |
| TraesCS7A01G461700.1 | Wheat | nucleus | 66.55 | 62.6 |
| EER90218 | Sorghum | nucleus | 67.13 | 62.46 |
| TraesCS7D01G449900.2 | Wheat | nucleus | 66.32 | 62.44 |
| CDY02285 | Canola | nucleus | 63.63 | 62.31 |
| EES04575 | Sorghum | nucleus | 66.32 | 62.24 |
| Zm00001d014377_P002 | Maize | nucleus | 66.67 | 62.16 |
| Bra010776.1-P | Field mustard | nucleus | 60.47 | 62.14 |
| CDY12048 | Canola | nucleus | 61.4 | 61.98 |
| CDX90245 | Canola | nucleus | 61.75 | 61.97 |
| KRH42603 | Soybean | nucleus | 65.26 | 61.66 |
| CDY09598 | Canola | nucleus | 62.46 | 61.38 |
| TraesCS6B01G167100.1 | Wheat | nucleus | 66.32 | 61.16 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 65.96 | 60.78 |
| TraesCS6D01G127600.2 | Wheat | nucleus | 65.85 | 60.73 |
| HORVU7Hr1G106280.1 | Barley | nucleus | 66.55 | 60.66 |
| Zm00001d053819_P002 | Maize | nucleus | 64.8 | 60.28 |
| HORVU6Hr1G026730.9 | Barley | nucleus | 65.5 | 60.28 |
| AT1G30330.3 | Thale cress | nucleus | 64.68 | 59.14 |
| Zm00001d036593_P001 | Maize | plastid | 66.08 | 58.85 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 35.09 | 58.71 |
| GSMUA_Achr11P... | Banana | nucleus | 54.85 | 57.9 |
| GSMUA_Achr4P25960_001 | Banana | nucleus | 54.04 | 57.68 |
| GSMUA_Achr1P08230_001 | Banana | mitochondrion | 36.61 | 47.14 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 33.1 | 45.65 |
| GSMUA_Achr1P20040_001 | Banana | nucleus | 39.18 | 42.84 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 41.99 | 42.04 |
| GSMUA_Achr8P13620_001 | Banana | nucleus | 23.04 | 40.7 |
| GSMUA_Achr9P08310_001 | Banana | vacuole | 23.16 | 40.66 |
| GSMUA_Achr9P14090_001 | Banana | nucleus | 42.46 | 39.89 |
| GSMUA_Achr3P05460_001 | Banana | nucleus | 44.56 | 39.16 |
| GSMUA_Achr6P36980_001 | Banana | nucleus | 38.36 | 38.23 |
| GSMUA_Achr10P... | Banana | nucleus | 29.12 | 36.94 |
| GSMUA_Achr6P07390_001 | Banana | nucleus | 27.84 | 36.34 |
| GSMUA_Achr6P12780_001 | Banana | nucleus | 29.24 | 35.92 |
| GSMUA_Achr6P01740_001 | Banana | nucleus | 42.92 | 35.32 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.2 | 35.28 |
| GSMUA_Achr8P23850_001 | Banana | nucleus | 43.86 | 35.15 |
| GSMUA_Achr5P05010_001 | Banana | nucleus | 35.79 | 35.13 |
| GSMUA_Achr6P29070_001 | Banana | nucleus, vacuole | 28.19 | 34.58 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 26.67 | 34.13 |
| GSMUA_Achr10P... | Banana | nucleus | 26.55 | 34.03 |
| GSMUA_Achr7P24330_001 | Banana | nucleus | 26.08 | 33.48 |
| GSMUA_Achr1P20000_001 | Banana | nucleus | 36.84 | 32.44 |
| GSMUA_Achr10P... | Banana | nucleus | 31.11 | 32.28 |
| GSMUA_Achr6P08090_001 | Banana | nucleus | 30.99 | 32.16 |
| GSMUA_Achr6P16450_001 | Banana | nucleus | 31.58 | 30.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.23 | 30.2 |
| GSMUA_Achr1P20010_001 | Banana | plasma membrane, plastid | 35.44 | 28.86 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G19850_001 |
| EnsemblPlants:GSMUA_Achr6P19850_001 | EnsemblPlants:GSMUA_Achr6T19850_001 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M0T8I3 |
| InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF68 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0002952CB3 |
| SEG:seg | : | : | : | : | : |
Description
Auxin response factor 17 [Source:GMGC_GENE;Acc:GSMUA_Achr6G19850_001]
Coordinates
chr6:-:14177065..14183930
Molecular Weight (calculated)
94915.9 Da
IEP (calculated)
6.187
GRAVY (calculated)
-0.404
Length
855 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLSSSNLTS EAHEEEKQCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE IDSQIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLSSQEQKDP YLLTELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAEELIAR DLHGKEWKFR HIFRGQPKRH LLTTGWSIFV
201: SAKRLVAGDS VLFIWNENNQ LLLGIRHANR PQTVMPSSVL SSDSMHIGLL AAAAHAASTN SRFTVFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPIG LPFFQGGKDD GIDLNSSLMW
401: LRDGGIPGIQ SMNSSSIAVT PWMQPSLDAS MLGMQPDMYK TVVAGALQEM RTMNPIKQVS TAMLQFQQPN NTASRSNPIL PSQTQSSFIQ HHLQQGHSFS
501: EQQEQPQVRQ SHYQQVPNVP STLSQLASSS QSQSTTLHMI SPSFQLKDFP DSNGNSVSAS TASPLNNILH QFSTEETSQH LSLPRYVQPI NSGTTHPNIS
601: LQSVTLPPFP GRECSVNQSG NMDTQNQHLF SVSENSSLLV QNGIPSLSAA VSENDSMNMT YAASRFLSSS GNDFTINQAL SGSNGMDESG SGFLRYPENV
701: DQVNPQSGTF VKVYRSGSFG RSLDISRFSS YHELRSELGH LFGLEGQLED PQRSGWQLVF VDRENDVLLV GDDPWQEFVN NVSCIKILSP QEVQQMGQQG
801: VDFASLPPIE KLQIKAWIPL WYGSPPSDEC LVEGGGTLPL DLEVGRMWPP LIPAH
101: PLSSQEQKDP YLLTELGTPS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAEELIAR DLHGKEWKFR HIFRGQPKRH LLTTGWSIFV
201: SAKRLVAGDS VLFIWNENNQ LLLGIRHANR PQTVMPSSVL SSDSMHIGLL AAAAHAASTN SRFTVFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPIG LPFFQGGKDD GIDLNSSLMW
401: LRDGGIPGIQ SMNSSSIAVT PWMQPSLDAS MLGMQPDMYK TVVAGALQEM RTMNPIKQVS TAMLQFQQPN NTASRSNPIL PSQTQSSFIQ HHLQQGHSFS
501: EQQEQPQVRQ SHYQQVPNVP STLSQLASSS QSQSTTLHMI SPSFQLKDFP DSNGNSVSAS TASPLNNILH QFSTEETSQH LSLPRYVQPI NSGTTHPNIS
601: LQSVTLPPFP GRECSVNQSG NMDTQNQHLF SVSENSSLLV QNGIPSLSAA VSENDSMNMT YAASRFLSSS GNDFTINQAL SGSNGMDESG SGFLRYPENV
701: DQVNPQSGTF VKVYRSGSFG RSLDISRFSS YHELRSELGH LFGLEGQLED PQRSGWQLVF VDRENDVLLV GDDPWQEFVN NVSCIKILSP QEVQQMGQQG
801: VDFASLPPIE KLQIKAWIPL WYGSPPSDEC LVEGGGTLPL DLEVGRMWPP LIPAH
001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L
Arabidopsis Description
ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.