Factsheet for GSMUA_Achr8P13630_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P12630_001
GSMUA_Achr4P05200_001
GSMUA_Achr4P21020_001
GSMUA_Achr4P21030_001
GSMUA_Achr4P22520_001
GSMUA_Achr4P22530_001
GSMUA_Achr5P03110_001
GSMUA_Achr8P20610_001
GSMUA_Achr8P20620_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P10690_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P16800_001
GSMUA_Achr9P24330_001
GSMUA_Achr9P25550_001
GSMUA_Achr9P26900_001
GSMUA_Achr9P26910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	GSMUA_Achr10P...	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr4P21020_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr4P22520_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr8P20610_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr9P10700_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr9P25550_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr10P...	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr4P21020_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr4P22520_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr8P20610_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr9P10700_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr9P25550_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr8P29850_001	AT3G62100.1	21734647
AT5G37020.1	GSMUA_Achr9P16800_001	AT3G62100.1	21734647
AT5G37020.1	GSMUA_Achr11P...	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr2P12630_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P05200_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P21030_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P22530_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr5P03110_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr8P20620_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr9P10690_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr9P24330_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr11P...	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr2P12630_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P05200_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P21030_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P22530_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr5P03110_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr8P20620_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P10690_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P24330_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P26900_001	AT4G32280.1	21734647
AT5G37020.1	GSMUA_Achr9P26910_001	AT4G32280.1	21734647
AT5G37020.1	GSMUA_Achr11P...	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr2P12630_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P05200_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P21030_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P22530_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr5P03110_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr8P20620_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr9P10690_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr9P24330_001	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	70.23	41.1
GSMUA_Achr11P...	Banana	nucleus	88.96	32.84
GSMUA_Achr4P25960_001	Banana	nucleus	84.62	31.59
KRH17251	Soybean	nucleus	82.61	29.3
GSMUA_Achr3P10240_001	Banana	nucleus	60.54	29.19
Bra004125.1-P	Field mustard	nucleus	75.92	29.1
KXG27404	Sorghum	nucleus	79.6	29.06
KRH72896	Soybean	nucleus	82.27	29.04
KRH30740	Soybean	nucleus	81.61	28.91
KRG98044	Soybean	nucleus	81.27	28.89
Zm00001d001879_P036	Maize	nucleus	78.93	28.89
CDY39274	Canola	nucleus	75.25	28.88
CDY07460	Canola	nucleus	75.25	28.81
GSMUA_Achr5P26580_001	Banana	nucleus	77.59	28.75
Os04t0671900-01	Rice	nucleus	78.6	28.73
Solyc02g037530.2.1	Tomato	nucleus	80.27	28.5
TraesCS2A01G547800.1	Wheat	nucleus	78.6	28.28
CDY53537	Canola	nucleus	76.92	28.26
AT5G37020.1	Thale cress	nucleus	76.59	28.24
TraesCS2B01G578500.1	Wheat	nucleus	78.6	28.21
TraesCS2D01G548900.1	Wheat	nucleus	78.6	28.21
GSMUA_Achr5P02450_001	Banana	nucleus	77.93	28.14
GSMUA_Achr9P08310_001	Banana	vacuole	45.82	28.13
CDX74594	Canola	nucleus	76.92	28.08
Solyc03g031970.2.1	Tomato	nucleus	79.26	28.08
HORVU2Hr1G121110.32	Barley	nucleus	78.6	28.04
GSMUA_Achr3P23290_001	Banana	nucleus	76.25	27.8
GSMUA_Achr6P19850_001	Banana	nucleus	78.26	27.37
GSMUA_Achr11P...	Banana	nucleus	75.59	27.26
Bra028110.1-P	Field mustard	nucleus	76.92	27.25
GSMUA_Achr1P08230_001	Banana	mitochondrion	58.86	26.51
GSMUA_Achr5P00590_001	Banana	nucleus	78.93	25.96
GSMUA_Achr11P...	Banana	nucleus	78.26	25.63
Zm00001d026590_P003	Maize	nucleus	71.24	25.12
GSMUA_Achr1P20040_001	Banana	nucleus	61.87	23.66
GSMUA_AchrUn_...	Banana	nucleus	48.49	22.83
GSMUA_Achr6P07390_001	Banana	nucleus	49.16	22.44
GSMUA_Achr9P18170_001	Banana	nucleus	63.88	22.37
GSMUA_Achr10P...	Banana	nucleus	49.5	22.19
GSMUA_Achr7P24330_001	Banana	nucleus	48.83	21.92
GSMUA_Achr2P19760_001	Banana	nucleus	48.83	21.86
GSMUA_Achr10P...	Banana	nucleus	48.16	21.36
PGSC0003DMT400048034	Potato	nucleus	53.51	21.28
GSMUA_Achr6P36980_001	Banana	nucleus	59.87	20.86
GSMUA_Achr6P12780_001	Banana	nucleus	48.49	20.83
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	48.49	20.8
GSMUA_Achr9P14090_001	Banana	nucleus	62.21	20.44
GSMUA_Achr3P05460_001	Banana	nucleus	62.21	19.12
GSMUA_Achr6P08090_001	Banana	nucleus	51.84	18.81
GSMUA_Achr10P...	Banana	nucleus	50.84	18.45
GSMUA_AchrUn_...	Banana	nucleus	52.17	17.65
GSMUA_Achr1P20000_001	Banana	nucleus	57.19	17.61
GSMUA_Achr8P23850_001	Banana	nucleus	62.54	17.53
GSMUA_Achr6P01740_001	Banana	nucleus	60.54	17.42
GSMUA_Achr6P16450_001	Banana	nucleus	50.84	17.41
GSMUA_Achr5P05010_001	Banana	nucleus	42.81	14.7
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	51.51	14.67
VIT_04s0079g00200.t01	Wine grape	nucleus	33.78	14.29
GSMUA_Achr8P13620_001	Banana	nucleus	3.68	2.27

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G13630_001	EnsemblPlants:GSMUA_Achr8P13630_001	EnsemblPlants:GSMUA_Achr8T13630_001	InterPro:IPR003340	InterPro:IPR015300
UniProt:M0TQ66	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF3	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000296A0A5	SEG:seg	:	:	:

Description

Auxin response factor 12 [Source:GMGC_GENE;Acc:GSMUA_Achr8G13630_001]

Coordinates

chr8:-:10383115..10386338

Molecular Weight (calculated)

33561.3 Da

IEP (calculated)

7.775

GRAVY (calculated)

-0.195

Length

299 amino acids

Sequence
(BLAST)

001: MKLSTVGIGQ QEPEEEEKRC LNSELWHACA GPLVCLPTAG TRVVYFPQGH SEQVAVSTNK EAEGHIPNYP SLPPQLFCQL HNVTMHADPE TDEVYAQMTL
101: QPLRLQEQKD AYFLIEMGVV SKQPVNYFCK TLTASDTSTH GGFSVRRRAA EKVFPPLDFS QQPPAQELVA RDLHGVEWKF KHIYRGQPKR HLLTTGWSVF
201: IGAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NGCFTVFYNP RQLPYSCTCN CLFLVHVQVF IDYSWLKFS

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.