Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P14090_001 | Banana | nucleus | 58.9 | 67.25 |
| GSMUA_Achr3P05460_001 | Banana | nucleus | 61.02 | 65.16 |
| GSMUA_Achr5P05010_001 | Banana | nucleus | 52.17 | 62.23 |
| GSMUA_Achr8P13630_001 | Banana | cytosol, nucleus, plastid | 17.42 | 60.54 |
| GSMUA_Achr8P23850_001 | Banana | nucleus | 62.08 | 60.45 |
| Os08t0520550-01 | Rice | nucleus | 34.36 | 56.04 |
| Os08t0520500-01 | Rice | cytosol | 2.69 | 56.0 |
| VIT_11s0065g00310.t01 | Wine grape | nucleus | 59.87 | 55.78 |
| Solyc07g016180.2.1 | Tomato | nucleus | 58.52 | 54.68 |
| PGSC0003DMT400025312 | Potato | nucleus | 58.23 | 54.31 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 31.57 | 52.9 |
| KRH49070 | Soybean | nucleus | 56.02 | 52.43 |
| KRH74145 | Soybean | nucleus | 54.96 | 51.72 |
| TraesCS7A01G252000.2 | Wheat | nucleus | 53.9 | 51.52 |
| PGSC0003DMT400035592 | Potato | nucleus | 54.28 | 51.41 |
| HORVU7Hr1G051930.4 | Barley | nucleus | 53.42 | 51.25 |
| TraesCS7D01G250100.4 | Wheat | nucleus | 53.8 | 51.19 |
| TraesCS7B01G138900.6 | Wheat | nucleus | 53.71 | 51.01 |
| Solyc05g047460.2.1 | Tomato | nucleus | 53.8 | 50.96 |
| Zm00001d031522_P007 | Maize | nucleus | 53.13 | 50.83 |
| EES15359 | Sorghum | nucleus | 53.42 | 50.68 |
| KRH60117 | Soybean | nucleus | 52.17 | 49.32 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 39.94 | 48.59 |
| KRH41404 | Soybean | nucleus | 51.59 | 48.16 |
| GSMUA_Achr5P02450_001 | Banana | nucleus | 35.9 | 45.05 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 21.85 | 44.42 |
| GSMUA_Achr3P23290_001 | Banana | nucleus | 34.55 | 43.78 |
| GSMUA_Achr4P25960_001 | Banana | nucleus | 33.59 | 43.57 |
| GSMUA_Achr6P19850_001 | Banana | nucleus | 35.32 | 42.92 |
| GSMUA_Achr5P26580_001 | Banana | nucleus | 33.3 | 42.87 |
| GSMUA_Achr11P... | Banana | nucleus | 33.4 | 42.84 |
| GSMUA_Achr1P20040_001 | Banana | nucleus | 32.15 | 42.71 |
| GSMUA_Achr11P... | Banana | nucleus | 33.69 | 42.22 |
| GSMUA_Achr5P00590_001 | Banana | nucleus | 35.8 | 40.92 |
| GSMUA_Achr11P... | Banana | nucleus | 35.51 | 40.42 |
| GSMUA_Achr9P08310_001 | Banana | vacuole | 18.48 | 39.43 |
| GSMUA_Achr6P36980_001 | Banana | nucleus | 32.44 | 39.28 |
| GSMUA_Achr1P08230_001 | Banana | mitochondrion | 24.16 | 37.8 |
| GSMUA_Achr6P07390_001 | Banana | nucleus | 23.39 | 37.1 |
| GSMUA_Achr10P... | Banana | nucleus | 24.06 | 37.09 |
| GSMUA_Achr6P12780_001 | Banana | nucleus | 24.45 | 36.49 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 23.29 | 36.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.85 | 35.75 |
| GSMUA_Achr10P... | Banana | nucleus | 22.91 | 35.68 |
| GSMUA_Achr6P29070_001 | Banana | nucleus, vacuole | 23.77 | 35.44 |
| GSMUA_Achr7P24330_001 | Banana | nucleus | 22.14 | 34.53 |
| GSMUA_Achr1P20000_001 | Banana | nucleus | 31.95 | 34.19 |
| GSMUA_Achr6P08090_001 | Banana | nucleus | 26.37 | 33.25 |
| GSMUA_Achr10P... | Banana | nucleus | 25.41 | 32.04 |
| GSMUA_Achr6P16450_001 | Banana | nucleus | 26.47 | 31.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.89 | 30.43 |
| GSMUA_Achr1P20010_001 | Banana | plasma membrane, plastid | 30.13 | 29.81 |
| GSMUA_Achr8P13620_001 | Banana | nucleus | 13.76 | 29.55 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr6G01740_001 | EnsemblPlants:GSMUA_Achr6P01740_001 | EnsemblPlants:GSMUA_Achr6T01740_001 | InterPro:IPR000270 |
| InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M0T3C2 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 |
| PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF9 | SMART:SM01019 |
| SUPFAM:SSF101936 | SUPFAM:SSF54277 | TMHMM:TMhelix | UniParc:UPI000294EF9C | SEG:seg | : |
Description
Auxin response factor 5 [Source:GMGC_GENE;Acc:GSMUA_Achr6G01740_001]
Coordinates
chr6:-:1115313..1123345
Molecular Weight (calculated)
116028.0 Da
IEP (calculated)
6.984
GRAVY (calculated)
-0.322
Length
1039 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVVAGEKTTI NKELWHACAG PLVALPPVGS LVVYFPQGHS EQVMQNTRYK EPTQLTGFFH RSFSYSPVLF SCNAIFSFTI TLLSSMQKDI DAHIPNYPNL
0101: PSKLICLLHN VTLHADPDTD EVYAQITLQP VNTYDKEALQ TSDLALKQTR PQTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELQARD
0201: LHDNLWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRYNVLSC FSFFTCKHMI SYISFILFLL FPHFSSIIFS EFYILFHSIR RANRQPTNLS
0301: SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRTSPSEF VIPFAKYQKA IYSNQVSLGM RFRMMFETEE SGTRRYMGTI TEISDLDVVR WKNSQWRNLK
0401: VGWDECAAGE RPSRVSIWNI EPIAAPFFIC PPPFFRKRPR QPGIPDDESS EMENLFKRAI PWLNEEICIK DSQSQNAIMP GLSLAQWMSM QQNPSLANSA
0501: MQNECLRSLS GPVVQNLGST SPLTQNQASL LQSQSLVQPS VQQQCPVIQN PQVLQTSLLQ TQPQRPEQPV PLQQQQSRIP VDIANQPNKQ LQVSDPRIQF
0601: QLVQKLQQQP SLLSQPKVQE TQLHQIQEQQ KTLLEVSQQL LDSPRSLAQP HVTPRQGAKM TSPGVQLPQS LQTQSQQKLQ QQQVLLADLP GITFPATSAT
0701: NPILANGSSL LATGGAHSST LNWTRLRNPV STEKNQLVTM LSPSSFEASV ANLNIAKELP KAVQDLKPSV PISKVQSQGA VDPQAYINDA VQLDYLDTTS
0801: SATSVCLSQT GTFPLTSFNQ PSMLRDIPPD DDVQGTDPRS SALMGVNNHI PGNMISNYNI SNDVHQELSS SLVSHSFGVP DLAFNSIDST INENSLLNAS
0901: CWAPAPPLQR MRTYTKVHKR GAVGRSIDIT RYSGYDELKH DIARMFSIGQ LEDLQKIGWK LVYVDHEKDV LLVGDDPWEE FVNCVQCIKI LSPQEVQQMS
1001: LTGDLANNIL PKQACSSSEG GNGWMGQRDH NSGSYDHLE
0101: PSKLICLLHN VTLHADPDTD EVYAQITLQP VNTYDKEALQ TSDLALKQTR PQTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELQARD
0201: LHDNLWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRYNVLSC FSFFTCKHMI SYISFILFLL FPHFSSIIFS EFYILFHSIR RANRQPTNLS
0301: SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRTSPSEF VIPFAKYQKA IYSNQVSLGM RFRMMFETEE SGTRRYMGTI TEISDLDVVR WKNSQWRNLK
0401: VGWDECAAGE RPSRVSIWNI EPIAAPFFIC PPPFFRKRPR QPGIPDDESS EMENLFKRAI PWLNEEICIK DSQSQNAIMP GLSLAQWMSM QQNPSLANSA
0501: MQNECLRSLS GPVVQNLGST SPLTQNQASL LQSQSLVQPS VQQQCPVIQN PQVLQTSLLQ TQPQRPEQPV PLQQQQSRIP VDIANQPNKQ LQVSDPRIQF
0601: QLVQKLQQQP SLLSQPKVQE TQLHQIQEQQ KTLLEVSQQL LDSPRSLAQP HVTPRQGAKM TSPGVQLPQS LQTQSQQKLQ QQQVLLADLP GITFPATSAT
0701: NPILANGSSL LATGGAHSST LNWTRLRNPV STEKNQLVTM LSPSSFEASV ANLNIAKELP KAVQDLKPSV PISKVQSQGA VDPQAYINDA VQLDYLDTTS
0801: SATSVCLSQT GTFPLTSFNQ PSMLRDIPPD DDVQGTDPRS SALMGVNNHI PGNMISNYNI SNDVHQELSS SLVSHSFGVP DLAFNSIDST INENSLLNAS
0901: CWAPAPPLQR MRTYTKVHKR GAVGRSIDIT RYSGYDELKH DIARMFSIGQ LEDLQKIGWK LVYVDHEKDV LLVGDDPWEE FVNCVQCIKI LSPQEVQQMS
1001: LTGDLANNIL PKQACSSSEG GNGWMGQRDH NSGSYDHLE
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.