Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400025312 | Potato | nucleus | 97.66 | 97.49 |
| Solyc05g047460.2.1 | Tomato | nucleus | 78.06 | 79.12 |
| VIT_11s0065g00310.t01 | Wine grape | nucleus | 77.07 | 76.86 |
| KRH49070 | Soybean | nucleus | 69.6 | 69.73 |
| KRH74145 | Soybean | nucleus | 66.91 | 67.39 |
| KRH60117 | Soybean | nucleus | 64.3 | 65.06 |
| KRH41404 | Soybean | nucleus | 65.11 | 65.05 |
| GSMUA_Achr3P05460_001 | Banana | nucleus | 56.38 | 64.44 |
| GSMUA_Achr9P14090_001 | Banana | nucleus | 52.25 | 63.85 |
| Solyc12g006350.1.1 | Tomato | nucleus | 10.43 | 62.37 |
| Os06t0702600-01 | Rice | nucleus | 54.68 | 61.35 |
| Os08t0520550-01 | Rice | nucleus | 34.17 | 59.65 |
| GSMUA_Achr5P05010_001 | Banana | nucleus | 46.58 | 59.47 |
| GSMUA_Achr6P01740_001 | Banana | nucleus | 54.68 | 58.52 |
| Os08t0520500-01 | Rice | cytosol | 2.61 | 58.0 |
| GSMUA_Achr8P23850_001 | Banana | nucleus | 55.49 | 57.83 |
| Solyc07g043620.2.1 | Tomato | nucleus | 26.8 | 56.76 |
| EER90336 | Sorghum | nucleus | 58.72 | 56.34 |
| TraesCS7D01G409700.1 | Wheat | nucleus | 58.81 | 55.66 |
| Os02t0141100-00 | Rice | nucleus | 55.85 | 55.65 |
| TraesCS7B01G316600.1 | Wheat | nucleus | 58.72 | 55.62 |
| TraesCS7A01G416400.1 | Wheat | nucleus | 58.63 | 55.58 |
| TraesCS6D01G102300.1 | Wheat | nucleus | 55.85 | 55.0 |
| TraesCS7D01G250100.4 | Wheat | nucleus | 53.96 | 54.95 |
| HORVU7Hr1G051930.4 | Barley | nucleus | 53.33 | 54.76 |
| TraesCS7B01G138900.6 | Wheat | nucleus | 53.87 | 54.75 |
| TraesCS7A01G252000.2 | Wheat | nucleus | 53.51 | 54.74 |
| TraesCS6B01G141300.2 | Wheat | nucleus | 55.58 | 54.64 |
| TraesCS6A01G113000.1 | Wheat | nucleus | 55.76 | 54.63 |
| HORVU6Hr1G020330.30 | Barley | nucleus | 55.85 | 54.43 |
| Zm00001d014690_P014 | Maize | nucleus | 58.18 | 54.19 |
| OQU84350 | Sorghum | nucleus | 52.07 | 54.11 |
| HORVU7Hr1G096460.7 | Barley | mitochondrion, nucleus, vacuole | 58.18 | 53.83 |
| Zm00001d031522_P007 | Maize | nucleus | 52.52 | 53.78 |
| EES15359 | Sorghum | nucleus | 52.79 | 53.61 |
| Zm00001d015243_P001 | Maize | nucleus | 50.81 | 51.74 |
| Solyc02g037530.2.1 | Tomato | nucleus | 35.25 | 46.56 |
| Solyc07g042260.2.1 | Tomato | nucleus | 47.3 | 46.26 |
| Solyc03g031970.2.1 | Tomato | nucleus | 35.07 | 46.21 |
| Solyc04g081240.2.1 | Tomato | nucleus | 34.62 | 41.4 |
| Solyc01g103050.2.1 | Tomato | nucleus | 22.66 | 38.53 |
| Solyc08g082630.2.1 | Tomato | nucleus | 20.77 | 35.87 |
| Solyc01g096070.2.1 | Tomato | nucleus | 21.49 | 34.69 |
| Solyc12g042070.1.1 | Tomato | nucleus | 25.63 | 34.42 |
| Solyc08g008380.2.1 | Tomato | nucleus | 21.13 | 34.41 |
| Solyc03g118290.2.1 | Tomato | nucleus | 25.36 | 33.33 |
| Solyc11g069190.1.1 | Tomato | nucleus | 22.12 | 30.33 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:IPR003340 | InterPro:IPR015300 | UniProt:K4CCD5 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 |
| PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF9 | SMART:SM01019 |
| SUPFAM:SSF101936 | SUPFAM:SSF54277 | EnsemblPlantsGene:Solyc07g016180.2 | EnsemblPlants:Solyc07g016180.2.1 | UniParc:UPI000276BDE8 | SEG:seg |
Description
Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4CCD5]
Coordinates
chr7:-:6386861..6394308
Molecular Weight (calculated)
123340.0 Da
IEP (calculated)
6.628
GRAVY (calculated)
-0.564
Length
1112 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKTPVNTAGV QQQHTVNGNP GEVEKKSINP ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ VAASMKKDVD AQIPNYPNLP SKLVCLLHNI TLHADPETDE
0101: VYAQMTLQPV PSFDKEALLR SDLSMKANKP QTEFFCKTLT ASDTSTHGGF SVPRRSAEKI FPPLDYSMQP PAQELVARDL HDNLWTFRHI YRGQPKRHLL
0201: TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKATYSSQV
0301: SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS IWEIEPVTAP FFICPTPPFF RSKRPRLPGM PDDDCSDLDG
0401: LFKRTMPWLG DDFGMKDPQG LPGLSLVQWM NMQQNPSLAN SMQPNYLHSL SGSVLQNVGG GADLSRQLCL PAPQLPQQNT LQFGSQRPTQ QVQQLDQLQK
0501: IPTTTLSPAG SIMQPQQQLS DISQQPRQNL INQSVPTNHV QAQLLQAQSL VQSQNVLQQQ QSFQNQLQRN LPQNLPQQQQ IMNQTQQQSF MQPQPSDPLN
0601: QQLHFSDNQL QMQLLQKLQQ QSLLAQQSLL QQPSQLMPIQ DQQKHLDVSQ NFSRSLATSQ MLDMSQTTSN STSLSQPQVA QQQMTINNSQ SNLRFAQPNQ
0701: HMKQQQQQQQ PGILPEIPGQ VGQILPPTTN QLSANCSSFL TGAVGGGQSV VTDDIPSCST SPSTNNCQNV VQPIMNGRIH RGTAAAEETT QSSLPLLSSS
0801: GLEAMSPNRN LVKDLQQKPD VKPSMNISKS QNHGFSTPQT YLNNAVPQMD YLDSSSSATS VYFSQNDVQL QQTTNPMSFS SQAIVFRDSQ DGEVQGDPRH
0901: SVAFGANMDN QLGISMMPDS LITNSLVGSR KDVSNNISSG GGMLSSYENP KDAQPELSSS MVSQSFGVPD MAFNSIDSTI NEGSFMNRGA WAPPPQMPRM
1001: RTFTKVHKRG AVGRSIDIAR YSGYEELKQD LARRFGIEGQ LEDRQRIGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI LSPQEVQQIS LDGDFGNNVQ
1101: NQACSSSDGG NV
0101: VYAQMTLQPV PSFDKEALLR SDLSMKANKP QTEFFCKTLT ASDTSTHGGF SVPRRSAEKI FPPLDYSMQP PAQELVARDL HDNLWTFRHI YRGQPKRHLL
0201: TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKATYSSQV
0301: SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS IWEIEPVTAP FFICPTPPFF RSKRPRLPGM PDDDCSDLDG
0401: LFKRTMPWLG DDFGMKDPQG LPGLSLVQWM NMQQNPSLAN SMQPNYLHSL SGSVLQNVGG GADLSRQLCL PAPQLPQQNT LQFGSQRPTQ QVQQLDQLQK
0501: IPTTTLSPAG SIMQPQQQLS DISQQPRQNL INQSVPTNHV QAQLLQAQSL VQSQNVLQQQ QSFQNQLQRN LPQNLPQQQQ IMNQTQQQSF MQPQPSDPLN
0601: QQLHFSDNQL QMQLLQKLQQ QSLLAQQSLL QQPSQLMPIQ DQQKHLDVSQ NFSRSLATSQ MLDMSQTTSN STSLSQPQVA QQQMTINNSQ SNLRFAQPNQ
0701: HMKQQQQQQQ PGILPEIPGQ VGQILPPTTN QLSANCSSFL TGAVGGGQSV VTDDIPSCST SPSTNNCQNV VQPIMNGRIH RGTAAAEETT QSSLPLLSSS
0801: GLEAMSPNRN LVKDLQQKPD VKPSMNISKS QNHGFSTPQT YLNNAVPQMD YLDSSSSATS VYFSQNDVQL QQTTNPMSFS SQAIVFRDSQ DGEVQGDPRH
0901: SVAFGANMDN QLGISMMPDS LITNSLVGSR KDVSNNISSG GGMLSSYENP KDAQPELSSS MVSQSFGVPD MAFNSIDSTI NEGSFMNRGA WAPPPQMPRM
1001: RTFTKVHKRG AVGRSIDIAR YSGYEELKQD LARRFGIEGQ LEDRQRIGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI LSPQEVQQIS LDGDFGNNVQ
1101: NQACSSSDGG NV
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.