Factsheet for Solyc08g082630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096070.2.1
Solyc01g103050.2.1
Solyc03g118290.2.1
Solyc03g120380.2.1
Solyc03g121060.2.1
Solyc04g054280.1.1
Solyc04g081240.2.1
Solyc05g008850.2.1
Solyc06g053840.2.1
Solyc06g066020.2.1
Solyc06g075150.2.1
Solyc07g042260.2.1
Solyc08g008380.2.1
Solyc08g021820.2.1
Solyc08g082630.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc11g069190.1.1
Solyc11g069500.1.1
Solyc12g007230.1.1
Solyc12g042070.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34310.1	Solyc04g081240.2.1	AT1G19850.1	22096563
AT1G34310.1	Solyc08g008380.2.1	AT1G34310.1	22096563
AT1G34310.1	Solyc08g082630.2.1	AT1G34310.1	22096563
AT1G34310.1	Solyc01g103050.2.1	AT1G59750.1	22096563
AT1G34310.1	Solyc08g008380.2.1	AT4G23980.1	22096563
AT1G34310.1	Solyc08g082630.2.1	AT4G23980.1	22096563
AT1G34310.1	Solyc03g118290.2.1	AT5G62000.1	21734647
AT1G34310.1	Solyc12g042070.1.1	AT5G62000.1	21734647
AT1G34390.1	Solyc08g008380.2.1	AT1G34310.1	21734647
AT1G34390.1	Solyc08g082630.2.1	AT1G34310.1	21734647
AT1G34390.1	Solyc09g083290.2.1	AT3G23050.1	21734647
AT1G35240.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT1G35240.1	Solyc07g042260.2.1	AT5G20730.1	21734647
AT4G23980.1	Solyc05g008850.2.1	AT1G15050.1	21734647
AT4G23980.1	Solyc04g081240.2.1	AT1G19850.1	22096563
AT4G23980.1	Solyc08g008380.2.1	AT1G35240.1	21734647
AT4G23980.1	Solyc08g082630.2.1	AT1G35240.1	21734647
AT4G23980.1	Solyc01g103050.2.1	AT1G59750.1	22096563
AT4G23980.1	Solyc06g075150.2.1	AT2G28350.1	22096563
AT4G23980.1	Solyc11g069500.1.1	AT2G28350.1	22096563
AT4G23980.1	Solyc03g120380.2.1	AT3G15540.1	22096563
AT4G23980.1	Solyc03g121060.2.1	AT3G16500.1	21734647
AT4G23980.1	Solyc01g096070.2.1	AT3G61830.1	22096563
AT4G23980.1	Solyc08g008380.2.1	AT4G23980.1	22096563
AT4G23980.1	Solyc08g082630.2.1	AT4G23980.1	22096563
AT4G23980.1	Solyc12g007230.1.1	AT4G29080.1	21734647
AT4G23980.1	Solyc06g066020.2.1	AT4G32280.1	21734647
AT4G23980.1	Solyc08g021820.2.1	AT4G32280.1	21734647
AT4G23980.1	Solyc04g054280.1.1	AT5G43700.1	21734647
AT4G23980.1	Solyc06g053840.2.1	AT5G43700.1	21734647
AT4G23980.1	Solyc09g083280.2.1	AT5G43700.1	21734647
AT4G23980.1	Solyc11g069190.1.1	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031965	Potato	nucleus	88.82	87.33
Solyc08g008380.2.1	Tomato	nucleus	62.73	59.15
VIT_02s0025g01740.t01	Wine grape	nucleus	59.78	56.45
Bra013748.1-P	Field mustard	nucleus	52.17	55.81
CDY47607	Canola	nucleus	51.71	55.13
CDY10978	Canola	nucleus	52.48	54.08
Bra019255.1-P	Field mustard	nucleus	52.17	53.93
CDY50434	Canola	nucleus	52.17	53.76
KRH49135	Soybean	nucleus	54.97	53.31
AT4G23980.1	Thale cress	nucleus	52.64	53.13
KRH00001	Soybean	nucleus	54.5	52.86
KRH65922	Soybean	nucleus	56.52	52.68
KRH75716	Soybean	nucleus	56.52	52.6
CDY03502	Canola	nucleus	48.91	52.5
Solyc01g096070.2.1	Tomato	nucleus	54.5	50.94
GSMUA_Achr2P19760_001	Banana	nucleus	51.71	49.85
GSMUA_Achr10P...	Banana	nucleus	51.24	49.48
GSMUA_Achr7P24330_001	Banana	nucleus	50.93	49.25
GSMUA_AchrUn_...	Banana	nucleus	48.29	48.98
Solyc01g103050.2.1	Tomato	nucleus	48.45	47.71
Solyc12g006350.1.1	Tomato	nucleus	12.89	44.62
CDY67714	Canola	nucleus	34.01	41.24
Os01t0236300-01	Rice	nucleus	44.41	40.92
AT1G35240.1	Thale cress	nucleus	37.58	40.88
CDY69758	Canola	nucleus	26.4	40.87
Bra034234.1-P	Field mustard	nucleus	34.16	40.67
CDY21993	Canola	nucleus	34.32	40.55
AT1G34390.1	Thale cress	nucleus	37.58	40.47
AT1G34410.1	Thale cress	nucleus	37.89	40.26
CDY48583	Canola	nucleus	34.16	40.22
AT1G34310.1	Thale cress	nucleus	36.96	40.13
AT1G35540.1	Thale cress	nucleus	37.58	40.0
EES02172	Sorghum	nucleus	42.7	39.97
AT1G35520.1	Thale cress	nucleus	36.49	39.63
CDY53570	Canola	nucleus	30.12	38.72
Zm00001d039267_P005	Maize	nucleus	40.68	37.86
TraesCS3B01G190100.1	Wheat	nucleus	44.25	37.6
CDX94748	Canola	endoplasmic reticulum, vacuole	21.58	37.57
TraesCS3A01G159200.1	Wheat	nucleus	44.25	37.55
Bra027944.1-P	Field mustard	nucleus	31.99	37.52
TraesCS3D01G166700.1	Wheat	nucleus	44.1	37.47
CDY41720	Canola	nucleus	31.99	37.45
AT1G34170.3	Thale cress	nucleus	30.9	36.45
CDX94777	Canola	nucleus	31.21	36.09
Solyc03g118290.2.1	Tomato	nucleus	47.2	35.93
CDY36940	Canola	nucleus	30.9	35.92
Solyc12g042070.1.1	Tomato	nucleus	46.12	35.87
CDY49005	Canola	nucleus	30.9	35.73
HORVU3Hr1G032230.6	Barley	nucleus, plastid	43.94	35.38
Bra018124.1-P	Field mustard	nucleus	30.43	35.32
CDY24168	Canola	nucleus	30.28	34.64
CDY54111	Canola	nucleus	30.43	34.57
Solyc07g043620.2.1	Tomato	nucleus	27.95	34.29
CDY55738	Canola	nucleus	28.57	34.07
Bra017362.1-P	Field mustard	nucleus	28.42	33.89
CDX94484	Canola	nucleus	28.42	29.23
Solyc11g069190.1.1	Tomato	nucleus	35.4	28.11
Solyc02g037530.2.1	Tomato	nucleus	35.71	27.32
Solyc03g031970.2.1	Tomato	nucleus	35.25	26.9
CDX94528	Canola	nucleus	26.4	25.41
CDY24162	Canola	nucleus	23.14	22.92
Solyc04g081240.2.1	Tomato	nucleus	33.07	22.9
Solyc07g016180.2.1	Tomato	nucleus	35.87	20.77
Solyc05g047460.2.1	Tomato	nucleus	34.32	20.15
Solyc07g042260.2.1	Tomato	nucleus	34.32	19.44

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	UniProt:D7R605	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
EMBL:HM037250	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF1
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	EnsemblPlantsGene:Solyc08g082630.2	EnsemblPlants:Solyc08g082630.2.1	UniParc:UPI0001D63534
SEG:seg	:	:	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:D7R605]

Coordinates

chr8:+:65361536..65365812

Molecular Weight (calculated)

72374.4 Da

IEP (calculated)

7.976

GRAVY (calculated)

-0.439

Length

644 amino acids

Sequence
(BLAST)

001: MNSPGKKDAL YHELWQLCAG PVVDVPREGE RVYYFPQGHM EQLVASINQE MDQRVPSFNL KSKVLCRVIN SHFLAEEDND EVYVQITLMP EAPHVPEPTT
101: PDPLIPQDVK PRFHSFCKVL TASDTSTHGG FSVLRKHANE CLPPLDLNQQ TPTQELIAKD LHDVEWRFKH IFRGQPRRHL LTTGWSTFVS SKKLVAGDSF
201: VFLRGNNGQL RVGVKRLVRQ QSSMPSSVMS SQSMHLGVLA TASHAVTTQT MFVVYYKPRT TQFIVGVNKY LEALKHEYAV GMRFKMQFEA EGNPDRRFMG
301: TIVGIDDLSS QWKNSAWRSL KVRWDEPAAI ARPDRVSPWE IKPYVCSIPN VLVPPTAEKN KRHRLHSEIK ISEQPSSSNA SAVWNPSLRS PQFNTFGINS
401: STNCALASLT ESGWQLPHLN TSGMLVDEPE DGRSAPTWCG FPCVLAPQFG QGTNQPIVIP TDGRKCDTKK TCRLFGIDLK SSSISTTEAR LQLQPAGISC
501: VFAERAPPNT VPAGDSDQKS ELSVDFKDQM QGHLRLPLKE VQSKQSCSTR SRTKVQMQGV AVGRAVDLTI LKGYDELTKE LEEMFEIQGE LQSRQKWGIL
601: FTDDEGDTML MGDYPWQDFC NVVRKIFICS SQDMKKLTLS RADS

Best Arabidopsis Sequence Match ( AT4G23980.1 )
(BLAST)

001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL DVGITASNLW SSVLTQPHEF AQSCITSQWS
401: SPQQCHRDAN EDAKKSDWLN NSYSVSNVAK DSTLNDQMVS PVEQKKPETT ANYRLFGIDL MSSSLAVPEE KTAPMRPINI SKPTMDSHSD PKSEISKVSE
501: EKKQEPAEGS PKEVQSKQSS STRSRTKVQM QGVPVGRAVD LNALKGYNEL IDDIEKLFDI KGELRSRNQW EIVFTDDEGD MMLVGDDPWP EFCNMVKRIF
601: IWSKEEVKKM TPGNQLRMLL REVETTLTTT SKTDNHSN

Arabidopsis Description

ARF9Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.