Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG90903 | Soybean | nucleus | 56.91 | 56.32 |
| KRH35895 | Soybean | nucleus | 55.85 | 54.97 |
| VIT_01s0011g04070.t01 | Wine grape | nucleus | 56.91 | 52.97 |
| Bra024898.1-P | Field mustard | cytosol | 38.83 | 43.71 |
| CDY17689 | Canola | cytosol | 43.62 | 43.16 |
| CDX77807 | Canola | nucleus | 43.09 | 43.09 |
| Bra026166.1-P | Field mustard | nucleus | 36.17 | 41.46 |
| CDY36527 | Canola | cytosol | 36.17 | 41.46 |
| AT1G15050.1 | Thale cress | nucleus | 40.43 | 41.08 |
| AT2G01200.2 | Thale cress | cytosol | 41.49 | 40.84 |
| CDY39608 | Canola | cytosol | 35.11 | 40.24 |
| CDY37364 | Canola | cytosol, nucleus, plastid | 13.83 | 36.11 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | UniProt:G9HPX3 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| EMBL:JN379452 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF29 |
| SUPFAM:SSF54277 | EnsemblPlantsGene:Solyc05g008850.2 | EnsemblPlants:Solyc05g008850.2.1 | UniParc:UPI000243DC10 | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPX3]
Coordinates
chr5:+:3078181..3080323
Molecular Weight (calculated)
22041.5 Da
IEP (calculated)
4.796
GRAVY (calculated)
-0.826
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSNSSEYLL NHATTLPSVY YQTNNKENGN FIDLGLSLRA LQPEAYYPST HGGYDELIDW QHLHPQLSKN SRSEYPTNFN NYDDESEGIQ SKERWEYVKV
101: NMDGVIVGRK ICLLEHSSYS SIATQLEDMF GKQNMDGLRL FQDGSEFSLF YKDRNDQWRI VGDVPWNEFA DRVKRLRIMR KDEAFFPN
101: NMDGVIVGRK ICLLEHSSYS SIATQLEDMF GKQNMDGLRL FQDGSEFSLF YKDRNDQWRI VGDVPWNEFA DRVKRLRIMR KDEAFFPN
001: MDPNTPADFF KGSSKFHTYY SQTKKGGGVI DLGLSLRTIQ HETYLPPARM IGLDGYGELI DWSQPSYNSI TQLKSEDTGH QRLAQGYYNN EGESRGKYAY
101: VKVNLDGLVV GRKVCLVDQG AYATLALQLN DMFGMQTVSG LRLFQTESEF SLVYRDREGI WRNVGDVPWK EFVESVDRMR IARRNDALLP F
101: VKVNLDGLVV GRKVCLVDQG AYATLALQLN DMFGMQTVSG LRLFQTESEF SLVYRDREGI WRNVGDVPWK EFVESVDRMR IARRNDALLP F
Arabidopsis Description
IAA32Auxin-responsive protein IAA32 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.