Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35895 | Soybean | nucleus | 95.26 | 94.76 |
| Solyc05g008850.2.1 | Tomato | nucleus | 56.32 | 56.91 |
| VIT_01s0011g04070.t01 | Wine grape | nucleus | 59.47 | 55.94 |
| CDX77807 | Canola | nucleus | 46.84 | 47.34 |
| Bra024898.1-P | Field mustard | cytosol | 41.58 | 47.31 |
| CDY17689 | Canola | cytosol | 46.84 | 46.84 |
| AT2G01200.2 | Thale cress | cytosol | 46.84 | 46.6 |
| CDY39608 | Canola | cytosol | 40.0 | 46.34 |
| Bra026166.1-P | Field mustard | nucleus | 39.47 | 45.73 |
| CDY36527 | Canola | cytosol | 39.47 | 45.73 |
| AT1G15050.1 | Thale cress | nucleus | 43.16 | 44.32 |
| CDY37364 | Canola | cytosol, nucleus, plastid | 16.32 | 43.06 |
Protein Annotations
| EntrezGene:100793397 | Gene3D:3.10.20.90 | MapMan:35.1 | EMBL:ACUP02012652 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlantsGene:GLYMA_20G120800 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | UniProt:I1NFP6 | InterPro:IPR000270 | EnsemblPlants:KRG90903 | ProteinID:KRG90903 | ProteinID:KRG90903.1 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF29 | SUPFAM:SSF54277 |
| UniParc:UPI00023DBD43 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:36342061..36343590
Molecular Weight (calculated)
21823.5 Da
IEP (calculated)
6.394
GRAVY (calculated)
-0.577
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNTSRFLL NSSTLHSVFY QEKQDDGIID LGLSLGTVRH EAYHSSANLY DEELMDWPHS NLNLKNSRTM HSRSVHQNFD EEIEGVQSNE RWAYVKVNMD
101: GVTIGRKICV LDHGGYSSLA LQLEDMFGSQ SVSGLRLFQS GSEYSLFYKD RQDNWRPVGD VPWKEFIECV KRLRIARKNS GIVSYSSRCT
101: GVTIGRKICV LDHGGYSSLA LQLEDMFGSQ SVSGLRLFQS GSEYSLFYKD RQDNWRPVGD VPWKEFIECV KRLRIARKNS GIVSYSSRCT
001: MDPNTPADFF KGSSKFHTYY SQTKKGGGVI DLGLSLRTIQ HETYLPPARM IGLDGYGELI DWSQPSYNSI TQLKSEDTGH QRLAQGYYNN EGESRGKYAY
101: VKVNLDGLVV GRKVCLVDQG AYATLALQLN DMFGMQTVSG LRLFQTESEF SLVYRDREGI WRNVGDVPWK EFVESVDRMR IARRNDALLP F
101: VKVNLDGLVV GRKVCLVDQG AYATLALQLN DMFGMQTVSG LRLFQTESEF SLVYRDREGI WRNVGDVPWK EFVESVDRMR IARRNDALLP F
Arabidopsis Description
IAA32Auxin-responsive protein IAA32 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.