Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17689 | Canola | cytosol | 73.61 | 27.89 |
| CDX77807 | Canola | nucleus | 70.83 | 27.13 |
| AT2G01200.2 | Thale cress | cytosol | 62.5 | 23.56 |
| CDY36527 | Canola | cytosol | 47.22 | 20.73 |
| CDY39608 | Canola | cytosol | 47.22 | 20.73 |
| KRH35895 | Soybean | nucleus | 44.44 | 16.75 |
| KRG90903 | Soybean | nucleus | 43.06 | 16.32 |
| VIT_01s0011g04070.t01 | Wine grape | nucleus | 43.06 | 15.35 |
| Solyc05g008850.2.1 | Tomato | nucleus | 36.11 | 13.83 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078HJ55 | UniProt:A0A078HJ55 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY37364 | ProteinID:CDY37364 | ProteinID:CDY37364.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00063914001 | PFAM:PF02309 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF29 | UniParc:UPI0004EE351B | : |
Description
BnaC02g33820DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJ55]
Coordinates
chrLK032398:-:265076..265431
Molecular Weight (calculated)
8394.0 Da
IEP (calculated)
8.463
GRAVY (calculated)
-0.679
Length
72 amino acids
Sequence
(BLAST)
(BLAST)
1: MKVKNQRLAQ GYKDGEEDRG KLDYVKVNMN GLVVSRKVCV LDEGTYSTLS LQLDSRFETE GIWRNVWDVP WK
001: MDPNTPADFF KGSSKFHTYY SQTKKGGGVI DLGLSLRTIQ HETYLPPARM IGLDGYGELI DWSQPSYNSI TQLKSEDTGH QRLAQGYYNN EGESRGKYAY
101: VKVNLDGLVV GRKVCLVDQG AYATLALQLN DMFGMQTVSG LRLFQTESEF SLVYRDREGI WRNVGDVPWK EFVESVDRMR IARRNDALLP F
101: VKVNLDGLVV GRKVCLVDQG AYATLALQLN DMFGMQTVSG LRLFQTESEF SLVYRDREGI WRNVGDVPWK EFVESVDRMR IARRNDALLP F
Arabidopsis Description
IAA32Auxin-responsive protein IAA32 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.