CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024898.1-P	Field mustard	cytosol	85.26	97.01
CDX77807	Canola	nucleus	91.58	92.55
AT2G01200.2	Thale cress	cytosol	78.42	78.01
CDY37364	Canola	cytosol, nucleus, plastid	27.89	73.61
CDY36527	Canola	cytosol	46.32	53.66
CDY39608	Canola	cytosol	45.79	53.05
KRG90903	Soybean	nucleus	46.84	46.84
KRH35895	Soybean	nucleus	46.32	46.07
VIT_01s0011g04070.t01	Wine grape	nucleus	46.84	44.06
Solyc05g008850.2.1	Tomato	nucleus	43.16	43.62

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078FX21	UniProt:A0A078FX21	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
EnsemblPlants:CDY17689	ProteinID:CDY17689	ProteinID:CDY17689.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00001909001	InterPro:IPR000270	InterPro:PB1_dom
PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF29	SUPFAM:SSF54277	UniParc:UPI0004EDB1BC

Description

BnaA06g35080DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX21]

Coordinates

chrLK032076:-:591538..592369

Molecular Weight (calculated)

21540.5 Da

IEP (calculated)

6.957

GRAVY (calculated)

-0.523

Length

190 amino acids

Sequence
(BLAST)

001: MDQNIPAGFS HGSSNFHTYY SQTKKGGGGV IDLGLSLRTI QHETYLPSPP MIGLDGYGEL IDWSQRPYTQ LKSEEPVNQR LAQQYYHDGK EGRGKLAYYV
101: KVNMDGSVVG RKVCVLDQGT YSTLALQLDN MFGMQTVSGL KLFQDESEFS LVYRDREGIW RNVGDVPWKE FVASVNRMRI ARRDDALLPY

Best Arabidopsis Sequence Match ( AT2G01200.1 )
(BLAST)

001: MDPNTPADFF KGSSKFHTYY SQTKKGGGVI DLGLSLRTIQ HETYLPPARM IGLDGYGELI DWSQPSYNSI TQLKSEDTGH QRLAQGYYNN EGESRGKYAY
101: VKVNLDGLVV GRKVCLVDQG AYATLALQLN DMFGMQTVSG LRLFQTESEF SLVYRDREGI WRNVGDVPWK EFVESVDRMR IARRNDALLP F

Arabidopsis Description

IAA32Auxin-responsive protein IAA32 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.