Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024898.1-P | Field mustard | cytosol | 84.04 | 94.61 |
| CDY17689 | Canola | cytosol | 92.55 | 91.58 |
| AT2G01200.2 | Thale cress | cytosol | 75.53 | 74.35 |
| CDY37364 | Canola | cytosol, nucleus, plastid | 27.13 | 70.83 |
| CDY36527 | Canola | cytosol | 46.28 | 53.05 |
| CDY39608 | Canola | cytosol | 45.74 | 52.44 |
| KRG90903 | Soybean | nucleus | 47.34 | 46.84 |
| KRH35895 | Soybean | nucleus | 46.81 | 46.07 |
| Solyc05g008850.2.1 | Tomato | nucleus | 43.09 | 43.09 |
| VIT_01s0011g04070.t01 | Wine grape | nucleus | 44.68 | 41.58 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078CM33 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX77807 |
| ProteinID:CDX77807 | ProteinID:CDX77807.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00128854001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF29 | SUPFAM:SSF54277 | UniParc:UPI0004EDC370 | : | : |
Description
BnaC07g20610D
Coordinates
chrLK031812:+:1971741..1972575
Molecular Weight (calculated)
21367.2 Da
IEP (calculated)
8.820
GRAVY (calculated)
-0.613
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQNTPAEFS HGSSNFHKYY PQTKKGGGGV IDLGLSLRTI QHETYLSSTP SLDGYGELID WSQRSYTQLK SEEPVNQRLA QQYYNDGKEG RGKLAYYVKV
101: NMDGSVVGRK VCILNQGTYS TLALQLDNMF GMQTVSGLKL FQDESEFSLV YRDKEGIWRN VGDVPWKEFV ASVNRMRIAR RNNALLPY
101: NMDGSVVGRK VCILNQGTYS TLALQLDNMF GMQTVSGLKL FQDESEFSLV YRDKEGIWRN VGDVPWKEFV ASVNRMRIAR RNNALLPY
001: MDPNTPADFF KGSSKFHTYY SQTKKGGGVI DLGLSLRTIQ HETYLPPARM IGLDGYGELI DWSQPSYNSI TQLKSEDTGH QRLAQGYYNN EGESRGKYAY
101: VKVNLDGLVV GRKVCLVDQG AYATLALQLN DMFGMQTVSG LRLFQTESEF SLVYRDREGI WRNVGDVPWK EFVESVDRMR IARRNDALLP F
101: VKVNLDGLVV GRKVCLVDQG AYATLALQLN DMFGMQTVSG LRLFQTESEF SLVYRDREGI WRNVGDVPWK EFVESVDRMR IARRNDALLP F
Arabidopsis Description
IAA32Auxin-responsive protein IAA32 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.