Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG90903 | Soybean | nucleus | 55.94 | 59.47 |
| KRH35895 | Soybean | nucleus | 55.45 | 58.64 |
| Solyc05g008850.2.1 | Tomato | nucleus | 52.97 | 56.91 |
| AT1G15050.1 | Thale cress | nucleus | 43.07 | 47.03 |
| CDY17689 | Canola | cytosol | 44.06 | 46.84 |
| AT2G01200.2 | Thale cress | cytosol | 44.06 | 46.6 |
| Bra024898.1-P | Field mustard | cytosol | 38.12 | 46.11 |
| Bra026166.1-P | Field mustard | nucleus | 37.13 | 45.73 |
| CDY36527 | Canola | cytosol | 37.13 | 45.73 |
| CDY39608 | Canola | cytosol | 37.13 | 45.73 |
| CDX77807 | Canola | nucleus | 41.58 | 44.68 |
| CDY37364 | Canola | cytosol, nucleus, plastid | 15.35 | 43.06 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | ProteinID:CCB50882 | ProteinID:CCB50882.1 |
| UniProt:F6HEV6 | EMBL:FN595752 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF29 | SUPFAM:SSF54277 | UniParc:UPI000210908E | ArrayExpress:VIT_01s0011g04070 | EnsemblPlantsGene:VIT_01s0011g04070 |
| EnsemblPlants:VIT_01s0011g04070.t01 | : | : | : | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F6HEV6]
Coordinates
chr1:-:3720067..3721588
Molecular Weight (calculated)
22979.9 Da
IEP (calculated)
4.663
GRAVY (calculated)
-0.538
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSHSQGFLW SPPSLHPVYY QTKEDDGIID LGLSLRTLQP QVYHPTGHNA FESVGSLEGY GAYGEPVDWP QLEAQSRNSN SGCPKVIPED CEEETEGVQS
101: KERWAYVKVN MDGVVIGRKI CVLDLAGYSS LALQLEDMFG RDSLSGLRLF QRESEFALFY KDREENWRTV GDVPWKEFVD SIKRLRIVRK NEAHFPSSLE
201: CT
101: KERWAYVKVN MDGVVIGRKI CVLDLAGYSS LALQLEDMFG RDSLSGLRLF QRESEFALFY KDREENWRTV GDVPWKEFVD SIKRLRIVRK NEAHFPSSLE
201: CT
001: MDPNTPADFF KGSSKFHTYY SQTKKGGGVI DLGLSLRTIQ HETYLPPARM IGLDGYGELI DWSQPSYNSI TQLKSEDTGH QRLAQGYYNN EGESRGKYAY
101: VKVNLDGLVV GRKVCLVDQG AYATLALQLN DMFGMQTVSG LRLFQTESEF SLVYRDREGI WRNVGDVPWK EFVESVDRMR IARRNDALLP F
101: VKVNLDGLVV GRKVCLVDQG AYATLALQLN DMFGMQTVSG LRLFQTESEF SLVYRDREGI WRNVGDVPWK EFVESVDRMR IARRNDALLP F
Arabidopsis Description
IAA32Auxin-responsive protein IAA32 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.