Factsheet for VIT_02s0025g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04070.t01
VIT_02s0025g01740.t01
VIT_04s0008g05560.t01
VIT_05s0020g04680.t01
VIT_05s0020g04690.t01
VIT_06s0004g02750.t01
VIT_06s0004g03130.t01
VIT_07s0005g02550.t01
VIT_09s0002g03410.t01
VIT_09s0002g05150.t01
VIT_11s0016g00640.t01
VIT_11s0016g03540.t01
VIT_12s0035g01800.t01
VIT_15s0046g00290.t01
VIT_17s0000g00320.t01
VIT_18s0001g13930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34310.1	VIT_18s0001g13930.t01	AT1G19850.1	22096563
AT1G34310.1	VIT_02s0025g01740.t01	AT1G34310.1	22096563
AT1G34310.1	VIT_12s0035g01800.t01	AT1G59750.1	22096563
AT1G34310.1	VIT_02s0025g01740.t01	AT4G23980.1	22096563
AT1G34310.1	VIT_17s0000g00320.t01	AT5G62000.1	21734647
AT1G34390.1	VIT_02s0025g01740.t01	AT1G34310.1	21734647
AT1G34390.1	VIT_07s0005g02550.t01	AT2G46990.1	21734647
AT1G34390.1	VIT_05s0020g04690.t01	AT3G23050.1	21734647
AT1G35240.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT1G35240.1	VIT_11s0016g00640.t01	AT5G20730.1	21734647
AT4G23980.1	VIT_01s0011g04070.t01	AT1G15050.1	21734647
AT4G23980.1	VIT_18s0001g13930.t01	AT1G19850.1	22096563
AT4G23980.1	VIT_02s0025g01740.t01	AT1G35240.1	21734647
AT4G23980.1	VIT_12s0035g01800.t01	AT1G59750.1	22096563
AT4G23980.1	VIT_06s0004g02750.t01	AT2G28350.1	22096563
AT4G23980.1	VIT_09s0002g05150.t01	AT3G15540.1	22096563
AT4G23980.1	VIT_09s0002g03410.t01	AT3G16500.1	21734647
AT4G23980.1	VIT_15s0046g00290.t01	AT3G61830.1	22096563
AT4G23980.1	VIT_07s0005g02550.t01	AT3G62100.1	21734647
AT4G23980.1	VIT_02s0025g01740.t01	AT4G23980.1	22096563
AT4G23980.1	VIT_11s0016g03540.t01	AT4G29080.1	21734647
AT4G23980.1	VIT_04s0008g05560.t01	AT4G32280.1	21734647
AT4G23980.1	VIT_05s0020g04680.t01	AT5G43700.1	21734647
AT4G23980.1	VIT_06s0004g03130.t01	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65922	Soybean	nucleus	69.35	68.45
KRH75716	Soybean	nucleus	69.06	68.06
KRH49135	Soybean	nucleus	65.84	67.62
KRH00001	Soybean	nucleus	65.4	67.17
VIT_15s0046g00290.t01	Wine grape	nucleus	67.6	65.67
CDY47607	Canola	nucleus	56.45	63.74
AT4G23980.1	Thale cress	nucleus	59.09	63.17
Bra013748.1-P	Field mustard	nucleus	55.57	62.96
Bra019255.1-P	Field mustard	nucleus	57.33	62.76
CDY10978	Canola	nucleus	57.48	62.72
CDY50434	Canola	nucleus	57.04	62.24
PGSC0003DMT400031965	Potato	nucleus	58.65	61.07
Solyc08g008380.2.1	Tomato	nucleus	60.56	60.47
CDY03502	Canola	nucleus	53.08	60.33
GSMUA_Achr2P19760_001	Banana	nucleus	58.65	59.88
Solyc08g082630.2.1	Tomato	nucleus	56.45	59.78
GSMUA_AchrUn_...	Banana	nucleus	54.25	58.27
GSMUA_Achr7P24330_001	Banana	nucleus	56.16	57.51
GSMUA_Achr10P...	Banana	nucleus	55.72	56.97
VIT_18s0089g00910.t01	Wine grape	nucleus	51.32	53.93
VIT_12s0035g01800.t01	Wine grape	nucleus	52.49	52.8
AT1G34390.1	Thale cress	nucleus	41.79	47.66
Os01t0236300-01	Rice	nucleus	48.68	47.5
CDY67714	Canola	nucleus	36.8	47.27
AT1G35240.1	Thale cress	nucleus	40.91	47.13
AT1G35540.1	Thale cress	nucleus	41.79	47.11
EES02172	Sorghum	nucleus	47.51	47.09
AT1G34310.1	Thale cress	nucleus	40.76	46.88
CDY21993	Canola	nucleus	37.1	46.42
Bra034234.1-P	Field mustard	nucleus	36.8	46.4
AT1G35520.1	Thale cress	nucleus	40.32	46.37
AT1G34410.1	Thale cress	nucleus	41.2	46.37
CDY48583	Canola	nucleus	36.8	45.89
CDY53570	Canola	nucleus	33.58	45.71
CDY69758	Canola	nucleus	27.71	45.43
Bra027944.1-P	Field mustard	nucleus	36.22	44.99
CDY41720	Canola	nucleus	36.22	44.91
AT1G34170.3	Thale cress	nucleus	35.19	43.96
Zm00001d039267_P005	Maize	nucleus	44.13	43.5
CDX94748	Canola	endoplasmic reticulum, vacuole	23.31	42.97
TraesCS3D01G166700.1	Wheat	nucleus	47.51	42.74
TraesCS3A01G159200.1	Wheat	nucleus	47.36	42.56
CDY49005	Canola	nucleus	34.75	42.55
TraesCS3B01G190100.1	Wheat	nucleus	47.21	42.48
VIT_01s0244g00150.t01	Wine grape	nucleus	47.8	42.39
CDX94777	Canola	nucleus	34.6	42.37
Bra017362.1-P	Field mustard	nucleus	32.99	41.67
CDY36940	Canola	nucleus	33.72	41.52
CDY55738	Canola	nucleus	32.84	41.48
Bra018124.1-P	Field mustard	nucleus	33.43	41.08
CDY54111	Canola	nucleus	33.87	40.74
VIT_17s0000g00320.t01	Wine grape	nucleus	51.47	40.72
CDY24168	Canola	nucleus	33.58	40.67
HORVU3Hr1G032230.6	Barley	nucleus, plastid	46.77	39.88
VIT_07s0104g01230.t01	Wine grape	nucleus	38.56	37.79
CDX94484	Canola	nucleus	32.7	35.62
VIT_06s0004g03130.t01	Wine grape	nucleus	37.24	31.83
CDX94528	Canola	nucleus	30.5	31.09
VIT_10s0003g04100.t01	Wine grape	nucleus	36.95	27.75
CDY24162	Canola	nucleus	25.37	26.62
VIT_12s0028g01170.t01	Wine grape	nucleus	35.19	25.89
VIT_04s0079g00200.t01	Wine grape	nucleus	24.93	24.05
VIT_18s0001g13930.t01	Wine grape	nucleus	33.14	23.71
VIT_11s0065g00310.t01	Wine grape	nucleus	37.68	23.05
VIT_11s0016g00640.t01	Wine grape	nucleus	35.92	21.21

Protein Annotations

EntrezGene:100247833	wikigene:100247833	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CBI34510	ProteinID:CBI34510.3	UniProt:D7TVI5
InterPro:DNA-bd_pseudobarrel_sf	EMBL:FN596251	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100247833	wikigene:LOC100247833	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF17
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0001BE403E	ArrayExpress:VIT_02s0025g01740	EnsemblPlantsGene:VIT_02s0025g01740
EnsemblPlants:VIT_02s0025g01740.t01	RefSeq:XP_002265162	RefSeq:XP_002265162.2	SEG:seg	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:D7TVI5]

Coordinates

chr2:+:1653577..1657782

Molecular Weight (calculated)

75684.0 Da

IEP (calculated)

6.477

GRAVY (calculated)

-0.532

Length

682 amino acids

Sequence
(BLAST)

001: MMVGFGGEGD DLYAELWKAC AGPLVDVPRR GERVFYFPQG HVEQLEASTN QELSQRIPLF NLPSKILCRV IHIQLRAEQE TDEVYAQITL LPEPDQAEPR
101: SPDPCTPEPP RPTVHSFCKV LTASDTSTHG GFSVLRKHAN ECLPQLDMNQ ATPTQELVAK DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLVAGDS
201: FVFLRGDNGE LRVGVRRLAR QQSTMPTSVI SSQSMHLGVL ATASHAVATQ TLFIVYYKPR TSQFIIGLNK YLEAVSNGFA VGMRFKMRFE GEDSPERRFS
301: GTIVGGEDFS PEWKDSEWRS LKVQWDEPAS IPRPEKVSPW EIEHYVSSVP QGLAPPGVLK NKRPRSNESP VPETGSAAAS AVWHLGLTQS HDLTQMSSTA
401: EGKRSENHVM WHHKQADIGG PLINSNTACV SRTQTEGSWL SSSHVSASQH QFQDATEDSK SVSAWPALSG YSTLHSSKLT SDTIIDPNGN GKKAVAEMAT
501: SCRLFGFELM NHSSSPPVGK AHGHSISVSS GTDSDQKSDL SKASKEQKQG QSHVSPKEIQ SKQNCYSNTR SRTKVQMQGI AVGRAVDLTA LEGYDELIDE
601: LEEMFEIKGE LRPRYKWEIV FTDDEGDMML VGDDPWPEFC NMVRRIFICS SQDVKKMSPG SKLPISSMEG EGTTISLDST EN

Best Arabidopsis Sequence Match ( AT4G23980.1 )
(BLAST)

001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL DVGITASNLW SSVLTQPHEF AQSCITSQWS
401: SPQQCHRDAN EDAKKSDWLN NSYSVSNVAK DSTLNDQMVS PVEQKKPETT ANYRLFGIDL MSSSLAVPEE KTAPMRPINI SKPTMDSHSD PKSEISKVSE
501: EKKQEPAEGS PKEVQSKQSS STRSRTKVQM QGVPVGRAVD LNALKGYNEL IDDIEKLFDI KGELRSRNQW EIVFTDDEGD MMLVGDDPWP EFCNMVKRIF
601: IWSKEEVKKM TPGNQLRMLL REVETTLTTT SKTDNHSN

Arabidopsis Description

ARF9Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.