Factsheet for AT1G34170.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G35240.1	Thale cress	nucleus	55.13	50.84
AT1G35540.1	Thale cress	nucleus	56.04	50.58
AT1G35520.1	Thale cress	nucleus	54.76	50.42
AT1G34390.1	Thale cress	nucleus	55.13	50.33
AT1G34310.1	Thale cress	nucleus	53.85	49.58
AT1G34410.1	Thale cress	nucleus	54.76	49.34
CDY53570	Canola	nucleus	43.77	47.7
Bra027944.1-P	Field mustard	nucleus	47.44	47.18
CDY41720	Canola	nucleus	47.44	47.09
CDY49005	Canola	nucleus	47.44	46.5
CDY67714	Canola	nucleus	45.05	46.33
CDY21993	Canola	nucleus	45.97	46.05
Bra034234.1-P	Field mustard	nucleus	45.6	46.03
CDX94777	Canola	nucleus	46.89	45.96
CDY48583	Canola	nucleus	45.6	45.52
CDY36940	Canola	nucleus	46.15	45.49
CDY24168	Canola	nucleus	46.52	45.12
Bra018124.1-P	Field mustard	nucleus	45.79	45.05
CDY54111	Canola	nucleus	46.15	44.44
Bra017362.1-P	Field mustard	nucleus	43.59	44.07
CDY55738	Canola	nucleus	43.59	44.07
CDY69758	Canola	nucleus	32.6	42.79
CDX94748	Canola	endoplasmic reticulum, vacuole	28.94	42.7
AT4G23980.1	Thale cress	nucleus	44.69	38.24
CDX94484	Canola	nucleus	42.86	37.38
VIT_02s0025g01740.t01	Wine grape	nucleus	43.96	35.19
KRH49135	Soybean	nucleus	42.67	35.09
GSMUA_Achr2P19760_001	Banana	nucleus	42.67	34.88
KRH65922	Soybean	nucleus	43.96	34.73
GSMUA_Achr10P...	Banana	nucleus	42.31	34.63
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	39.38	34.57
AT3G61830.1	Thale cress	nucleus	37.91	34.39
KRH00001	Soybean	nucleus	41.76	34.34
KRH75716	Soybean	nucleus	43.22	34.1
GSMUA_AchrUn_...	Banana	nucleus	39.56	34.02
Solyc08g008380.2.1	Tomato	nucleus	41.94	33.53
GSMUA_Achr7P24330_001	Banana	nucleus	39.38	32.28
PGSC0003DMT400031965	Potato	nucleus	38.64	32.21
AT1G59750.1	Thale cress	nucleus	39.01	32.03
CDX94528	Canola	nucleus	37.91	30.94
Solyc08g082630.2.1	Tomato	nucleus	36.45	30.9
EES02172	Sorghum	nucleus	35.9	28.49
Os01t0236300-01	Rice	nucleus	36.45	28.47
CDY24162	Canola	nucleus	33.7	28.31
Zm00001d039267_P005	Maize	nucleus	33.88	26.73
TraesCS3B01G190100.1	Wheat	nucleus	36.45	26.25
TraesCS3D01G166700.1	Wheat	nucleus	36.45	26.25
TraesCS3A01G159200.1	Wheat	nucleus	36.45	26.22
AT5G62000.1	Thale cress	nucleus	39.93	25.38
HORVU3Hr1G032230.6	Barley	nucleus, plastid	36.45	24.88
AT5G60450.1	Thale cress	nucleus	33.15	22.97
AT5G37020.1	Thale cress	nucleus	32.42	21.82
AT1G30330.3	Thale cress	nucleus	34.07	19.89
AT1G19850.1	Thale cress	nucleus	31.68	19.18
AT1G19220.1	Thale cress	nucleus	33.15	16.67
AT5G20730.1	Thale cress	nucleus	32.23	15.11

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:840316	ProteinID:AEE31681.1
Symbol:ARF13	ArrayExpress:AT1G34170	EnsemblPlantsGene:AT1G34170	RefSeq:AT1G34170	TAIR:AT1G34170	RefSeq:AT1G34170-TAIR-G
EnsemblPlants:AT1G34170.3	TAIR:AT1G34170.3	InterPro:AUX/IAA_dom	Unigene:At.51184	InterPro:Auxin_resp	InterPro:B3_DNA-bd
ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F4HT52	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	RefSeq:NP_001154393.1	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF1	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0001A7B277	SEG:seg

Description

ARF13Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F4HT52]

Coordinates

chr1:-:12443578..12446764

Molecular Weight (calculated)

62373.8 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.388

Length

546 amino acids

Sequence
(BLAST)

001: MENNGEMNAQ PELSVDITKT YMYEKLWNIC AGPLCVLPKP GEKVYYFPQG HIELIENSTR DELDHIRPIF DLPSKLRCRV VAIDRKVDKN TDEVYAQISL
101: MPDTTEVMTH NTTMDTRRPI VYFFSKILTA SDVSLSGGLI IPKQYAIECF PPLDMSQPIS TQNLVAKDLY GQEWSFKHVF RGTPQRHMFT SGGGWSVFAT
201: TKRLIVGDIF VLLRGENGEL RFGIRRAKHQ QGHIPSSVIS ANCMQHGVIA SVVNAFKTKC MFNVVYKPRM QFEGKDFSEK RYDGTIIGVN DMSPHWKDSE
301: WRSLKVQWDE LSPFLRPNQV SPWDIEHLIP SSDISQSSLK KKKHWLQLNE IGATLSNLWT CQEIGQRSMN SPISVPEFSY PNAIEDSKFL SGLLLNHSLL
401: AIPNENYNSD QMIQPRKEDI TTEATTSCLL FGVDLTKVHM QGVAISRAVD LTAMHGYNQL IQKLEELFDL KDELRTRNQW EIVFTNNEGA EMLVGDDPWP
501: EFCNMAKRIF ICSKEEIKKM KLKNKFFQPE SKALTSSDVP PNVTDN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.