Factsheet for AT1G19220.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83778	Canola	nucleus	84.35	89.8
Bra016517.1-P	Field mustard	nucleus	83.33	89.6
CDX96672	Canola	nucleus	84.07	89.51
Bra025720.1-P	Field mustard	nucleus	86.37	89.42
CDY26690	Canola	nucleus	86.37	89.42
CDY41030	Canola	nucleus	86.65	88.94
KRH37536	Soybean	nucleus	66.85	64.53
KRH12587	Soybean	nucleus	66.21	64.08
KRH02575	Soybean	nucleus	65.84	62.94
KRH19355	Soybean	nucleus	65.47	62.86
VIT_11s0016g00640.t01	Wine grape	nucleus	66.67	62.68
GSMUA_Achr3P10240_001	Banana	nucleus	34.07	59.68
Solyc07g042260.2.1	Tomato	nucleus	62.34	59.54
PGSC0003DMT400006151	Potato	nucleus	62.25	58.43
GSMUA_Achr9P18170_001	Banana	nucleus	45.76	58.2
AT5G20730.1	Thale cress	nucleus	61.79	57.6
Os06t0196700-02	Rice	nucleus	50.92	52.42
Zm00001d045026_P002	Maize	nucleus	50.64	52.23
TraesCS7A01G160800.1	Wheat	nucleus	51.2	52.16
TraesCS7D01G161900.1	Wheat	nucleus	51.01	52.02
KXG19536	Sorghum	nucleus	50.28	51.85
TraesCS7B01G065800.2	Wheat	plastid	50.64	50.88
HORVU7Hr1G033820.5	Barley	nucleus	49.17	50.09
AT5G37020.1	Thale cress	nucleus	34.07	45.62
AT1G30330.3	Thale cress	nucleus	37.75	43.85
AT1G19850.1	Thale cress	nucleus	32.87	39.58
AT4G23980.1	Thale cress	nucleus	22.19	37.77
AT3G61830.1	Thale cress	nucleus	20.72	37.38
AT1G59750.1	Thale cress	nucleus	22.65	36.99
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	20.53	35.85
AT1G34390.1	Thale cress	nucleus	19.61	35.62
AT1G34410.1	Thale cress	nucleus	19.8	35.48
AT1G34310.1	Thale cress	nucleus	19.34	35.41
AT1G35520.1	Thale cress	nucleus	19.24	35.24
AT1G35240.1	Thale cress	nucleus	19.15	35.14
AT1G35540.1	Thale cress	nucleus	19.52	35.04
AT1G34170.3	Thale cress	nucleus	16.67	33.15
AT5G62000.1	Thale cress	nucleus	25.14	31.78
AT5G60450.1	Thale cress	nucleus	22.56	31.09

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:838505	ProteinID:AAF82232.1
ProteinID:AAG35176.1	EMBL:AB493467	ProteinID:AEE29819.1	EMBL:AJ441312	Symbol:ARF19	ArrayExpress:AT1G19220
EnsemblPlantsGene:AT1G19220	RefSeq:AT1G19220	TAIR:AT1G19220	RefSeq:AT1G19220-TAIR-G	EnsemblPlants:AT1G19220.1	TAIR:AT1G19220.1
InterPro:AUX/IAA_dom	EMBL:AY669794	Unigene:At.10488	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ncoils:Coil
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009719	GO:GO:0009723	GO:GO:0009725
GO:GO:0009733	GO:GO:0009734	GO:GO:0009791	GO:GO:0009987	GO:GO:0010311	GO:GO:0043565
GO:GO:0046983	GO:GO:0048366	GO:GO:0048527	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
RefSeq:NP_173356.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PO:PO:0000013
PO:PO:0000016	PO:PO:0000025	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009015
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF21
UniProt:Q8RYC8	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	EMBL:U53672	UniParc:UPI0000162E07
SEG:seg	:	:	:	:	:

Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]

Coordinates

chr1:-:6627683..6633133

Molecular Weight (calculated)

120582.0 Da

IEP (calculated)

6.663

GRAVY (calculated)

-0.626

Length

1086 amino acids

Sequence
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.