Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG19536 | Sorghum | nucleus | 88.53 | 88.7 |
| Zm00001d045026_P002 | Maize | nucleus | 87.68 | 87.84 |
| TraesCS7D01G161900.1 | Wheat | nucleus | 87.58 | 86.76 |
| TraesCS7A01G160800.1 | Wheat | nucleus | 87.3 | 86.4 |
| TraesCS7B01G065800.2 | Wheat | plastid | 86.73 | 84.64 |
| HORVU7Hr1G033820.5 | Barley | nucleus | 83.41 | 82.55 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 35.92 | 61.13 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 48.06 | 59.37 |
| CDX83778 | Canola | nucleus | 50.52 | 52.25 |
| CDX96672 | Canola | nucleus | 50.33 | 52.06 |
| KRH37536 | Soybean | nucleus | 55.26 | 51.82 |
| Bra016517.1-P | Field mustard | nucleus | 49.48 | 51.68 |
| Os08t0520550-01 | Rice | nucleus | 31.18 | 51.65 |
| KRH12587 | Soybean | nucleus | 54.6 | 51.34 |
| CDY26690 | Canola | nucleus | 50.9 | 51.19 |
| Bra025720.1-P | Field mustard | nucleus | 50.9 | 51.19 |
| KRH02575 | Soybean | nucleus | 55.07 | 51.14 |
| CDY41030 | Canola | nucleus | 51.09 | 50.95 |
| KRH19355 | Soybean | nucleus | 54.6 | 50.93 |
| AT1G19220.1 | Thale cress | nucleus | 52.42 | 50.92 |
| VIT_11s0016g00640.t01 | Wine grape | nucleus | 55.26 | 50.48 |
| Os04t0671900-01 | Rice | nucleus | 38.86 | 50.12 |
| Solyc07g042260.2.1 | Tomato | nucleus | 53.27 | 49.43 |
| CDX92437 | Canola | nucleus | 48.34 | 49.04 |
| PGSC0003DMT400006151 | Potato | nucleus | 53.18 | 48.49 |
| Bra020125.1-P | Field mustard | nucleus | 50.24 | 48.18 |
| Os06t0702600-01 | Rice | nucleus | 45.21 | 48.13 |
| Os02t0164900-01 | Rice | nucleus | 41.14 | 47.8 |
| Os06t0677800-01 | Rice | nucleus | 41.52 | 47.76 |
| CDY45069 | Canola | nucleus | 49.38 | 46.81 |
| CDY16560 | Canola | nucleus | 46.16 | 46.74 |
| AT5G20730.1 | Thale cress | nucleus | 51.09 | 46.27 |
| Os11t0523800-01 | Rice | nucleus | 16.02 | 46.17 |
| Os12t0613700-01 | Rice | nucleus | 38.86 | 45.61 |
| Os02t0141100-00 | Rice | nucleus | 45.69 | 43.19 |
| Os04t0664400-01 | Rice | nucleus | 32.89 | 37.72 |
| Os02t0557200-01 | Rice | nucleus | 23.51 | 36.58 |
| Os04t0442000-01 | Rice | nucleus | 23.03 | 36.11 |
| Os08t0520500-01 | Rice | cytosol | 1.71 | 36.0 |
| Bra002327.1-P | Field mustard | nucleus | 48.82 | 35.79 |
| Os01t0927600-01 | Rice | nucleus | 24.93 | 32.55 |
| Os01t0236300-01 | Rice | nucleus | 20.47 | 30.9 |
| Os12t0479400-02 | Rice | nucleus | 24.08 | 30.2 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | EntrezGene:9270361 | UniProt:A3B9A0 |
| InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | ProteinID:BAF18968.1 | ProteinID:BAS96617.1 | ncoils:Coil |
| InterPro:DNA-bd_pseudobarrel_sf | ProteinID:EAZ36139.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:IPR003340 | InterPro:IPR015300 | EnsemblPlantsGene:Os06g0196700 | EnsemblPlants:Os06t0196700-02 | InterPro:PB1_dom | PFAM:PF02309 |
| PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF21 |
| SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0000F1981D | RefSeq:XP_015643020.1 | SEG:seg |
Description
AUXIN RESPONSE FACTOR 16Similar to Auxin response factor 1. (Os06t0196700-01);Auxin response factor, Transcription factor, Cytokinin-mediated inhibition of phosphate transport, Phosphate signaling, Auxin and phosphate starvation response (Os06t0196700-02)
Coordinates
chr6:+:4926019..4932612
Molecular Weight (calculated)
116867.0 Da
IEP (calculated)
6.596
GRAVY (calculated)
-0.522
Length
1055 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKDQGSSGVS PAPGEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ
0101: PVNKYDRDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML
0301: FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD
0401: DFALKDVQSA LFPGLSLVQW MAMQQNPQML TAASQTVQSP YLNSNALAMQ DVMGSSNEDP TKRLNTQAQN MVLPNLQVGS KVDHPVMSQH QQQPHQLSQQ
0501: QQVQPSQQSS VVLQQHQAQL LQQNAIHLQQ QQEHLQRQQS QPAQQLKAAS SLHSVEQHKL KEQTSGGQVA SQAQMLNQIF PPSSSQLQQL GLPKSPTHRQ
0601: GLTGLPIAGS LQQPTLTQTS QVQQAAEYQQ ALLQSQQQQQ QLQLQQLSQP EVQLQLLQKI QQQNMLSQLN PQHQSQLIQQ LSQKSQEILQ QQILQHQFGG
0701: SDSIGQLKQS PSQQAPLNHM TGSLTPQQLV RSHSALAESG DPSSSTAPST SRISPINSLS RANQGSRNLT DMVATPQIDN LLQEIQSKPD NRIKNDIQSK
0801: ETVPIHNRHP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DNNVQVDPRD NFLIAENVDA LMPDALLSRG MASGKGMCTL TSGQRDHRDV ENELSSAAFS
0901: SQSFGVPDMS FKPGCSSDVA VTDAGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY RDYDELRHDL ACMFGIQGQL EDPYRMDWKL VYVDHENDIL
1001: LVGDDPWEEF VGCVKSIKIL SAAEVQQMSL DGDLGGVPPQ TQACSASDDA NAWRG
0101: PVNKYDRDAM LASELGLKQN KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML
0301: FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD
0401: DFALKDVQSA LFPGLSLVQW MAMQQNPQML TAASQTVQSP YLNSNALAMQ DVMGSSNEDP TKRLNTQAQN MVLPNLQVGS KVDHPVMSQH QQQPHQLSQQ
0501: QQVQPSQQSS VVLQQHQAQL LQQNAIHLQQ QQEHLQRQQS QPAQQLKAAS SLHSVEQHKL KEQTSGGQVA SQAQMLNQIF PPSSSQLQQL GLPKSPTHRQ
0601: GLTGLPIAGS LQQPTLTQTS QVQQAAEYQQ ALLQSQQQQQ QLQLQQLSQP EVQLQLLQKI QQQNMLSQLN PQHQSQLIQQ LSQKSQEILQ QQILQHQFGG
0701: SDSIGQLKQS PSQQAPLNHM TGSLTPQQLV RSHSALAESG DPSSSTAPST SRISPINSLS RANQGSRNLT DMVATPQIDN LLQEIQSKPD NRIKNDIQSK
0801: ETVPIHNRHP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DNNVQVDPRD NFLIAENVDA LMPDALLSRG MASGKGMCTL TSGQRDHRDV ENELSSAAFS
0901: SQSFGVPDMS FKPGCSSDVA VTDAGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY RDYDELRHDL ACMFGIQGQL EDPYRMDWKL VYVDHENDIL
1001: LVGDDPWEEF VGCVKSIKIL SAAEVQQMSL DGDLGGVPPQ TQACSASDDA NAWRG
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.