Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G058600.1 | Wheat | nucleus | 71.84 | 78.66 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 71.48 | 78.57 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 70.76 | 77.78 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 46.93 | 76.47 |
| GSMUA_Achr10P... | Banana | nucleus | 64.98 | 74.69 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 63.9 | 72.54 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 72.2 | 72.46 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 62.82 | 71.6 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 63.18 | 70.56 |
| CDY10694 | Canola | mitochondrion | 42.24 | 67.24 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 58.12 | 66.81 |
| Os03t0633500-01 | Rice | cytosol | 55.6 | 66.09 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 60.29 | 66.01 |
| PGSC0003DMT400041976 | Potato | nucleus | 50.18 | 65.26 |
| Solyc06g008590.2.1 | Tomato | nucleus | 48.38 | 64.42 |
| KRG92683 | Soybean | nucleus | 52.71 | 64.32 |
| Solyc06g053830.2.1 | Tomato | nucleus | 50.18 | 63.76 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 55.6 | 63.37 |
| PGSC0003DMT400013627 | Potato | nucleus | 48.74 | 63.08 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 54.15 | 63.03 |
| Solyc09g083290.2.1 | Tomato | nucleus | 53.07 | 62.29 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 51.62 | 61.9 |
| Os03t0742900-01 | Rice | vacuole | 52.71 | 61.86 |
| KRH34377 | Soybean | nucleus | 53.07 | 61.51 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 52.35 | 61.44 |
| PGSC0003DMT400015610 | Potato | nucleus | 52.71 | 61.34 |
| KRH68738 | Soybean | nucleus | 53.79 | 61.32 |
| Bra040398.1-P | Field mustard | nucleus | 50.9 | 61.04 |
| KRG96977 | Soybean | nucleus | 50.54 | 60.87 |
| KRH32099 | Soybean | nucleus | 54.15 | 60.48 |
| KRH67289 | Soybean | nucleus | 54.87 | 59.84 |
| KRG95616 | Soybean | nucleus | 54.15 | 59.52 |
| CDY18214 | Canola | nucleus | 47.65 | 58.93 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 50.18 | 58.9 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 51.26 | 58.68 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 50.18 | 58.65 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 50.18 | 58.65 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 52.71 | 58.63 |
| CDX89832 | Canola | nucleus | 47.29 | 58.48 |
| Solyc01g097290.2.1 | Tomato | nucleus | 52.71 | 58.17 |
| Bra032520.1-P | Field mustard | nucleus | 47.65 | 58.15 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 48.01 | 58.08 |
| Bra030560.1-P | Field mustard | nucleus | 48.01 | 58.08 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 48.01 | 58.08 |
| Bra015298.1-P | Field mustard | nucleus | 46.93 | 58.04 |
| Bra039855.1-P | Field mustard | nucleus | 48.74 | 57.94 |
| CDY47148 | Canola | nucleus | 48.74 | 57.94 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 48.74 | 57.94 |
| CDY32537 | Canola | nucleus | 47.65 | 57.89 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 47.65 | 57.89 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 49.82 | 57.5 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 49.82 | 57.5 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 49.1 | 57.38 |
| Bra040122.1-P | Field mustard | nucleus | 46.57 | 57.33 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 50.18 | 57.2 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 50.54 | 56.91 |
| AT4G14550.2 | Thale cress | nucleus | 46.93 | 55.56 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 44.04 | 52.81 |
| KRH71337 | Soybean | nucleus | 32.13 | 52.35 |
| Os01t0178500-02 | Rice | nucleus | 36.1 | 50.25 |
| CDY50750 | Canola | nucleus, plastid | 51.26 | 48.8 |
| Os12t0601400-01 | Rice | nucleus | 33.21 | 46.7 |
| Os05t0230700-01 | Rice | nucleus | 42.6 | 45.91 |
| Os05t0178600-01 | Rice | nucleus | 35.02 | 45.75 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 54.15 | 45.32 |
| Os06t0335500-01 | Rice | nucleus | 42.96 | 44.74 |
| Os01t0231000-01 | Rice | nucleus | 40.07 | 42.21 |
| Os03t0797800-01 | Rice | nucleus | 29.96 | 42.13 |
| Os03t0633800-01 | Rice | nucleus | 32.49 | 39.82 |
| Os05t0559400-01 | Rice | nucleus | 39.71 | 39.15 |
| Os01t0675700-01 | Rice | nucleus | 37.18 | 38.01 |
| Os07t0182400-01 | Rice | plastid | 28.52 | 36.07 |
| CDY63072 | Canola | nucleus | 48.74 | 33.92 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:4352721 | ProteinID:ABA99793.1 | EMBL:AK068213 | InterPro:AUX/IAA_dom |
| InterPro:AUX_IAA | ProteinID:BAF30228.1 | ProteinID:BAT17959.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | EnsemblPlantsGene:Os12g0601300 | EnsemblPlants:Os12t0601300-01 |
| UniProt:P0C132 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 |
| SUPFAM:SSF54277 | UniParc:UPI0000680CAB | RefSeq:XP_015620571.1 | SEG:seg | : | : |
Description
IAA30Similar to Auxin-responsive protein (Aux/IAA) (Fragment). (Os12t0601300-01)
Coordinates
chr12:-:25310893..25316150
Molecular Weight (calculated)
28994.1 Da
IEP (calculated)
4.880
GRAVY (calculated)
-0.416
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MAADLAFEAT ELRLGLPGGG GDGDAAAAAA RSSSGKRGFA ETIDLKLKLE PAAAAVDDDD DKEEAAADDR EKKVDIVGAD NDDASPPAAA AAGGMKRSPS
101: QSSVVTAAAD PEKPRAPKAQ VVGWPPVRSY RKNILAVQAD KGKDAADGGG DKSGAGAAAA AFVKVSMDGA PYLRKVDLKM YKSYLELSKA LEKMFSSFTI
201: GNCGSHGVNG MNESKIADLL NGSEYVPTYE DKDGDWMLVG DVPWEMFVES CKRLRIMKGS EAIGLAPRAM EKCKNRS
101: QSSVVTAAAD PEKPRAPKAQ VVGWPPVRSY RKNILAVQAD KGKDAADGGG DKSGAGAAAA AFVKVSMDGA PYLRKVDLKM YKSYLELSKA LEKMFSSFTI
201: GNCGSHGVNG MNESKIADLL NGSEYVPTYE DKDGDWMLVG DVPWEMFVES CKRLRIMKGS EAIGLAPRAM EKCKNRS
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
Arabidopsis Description
IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.