Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G112440.1 | Barley | cytosol, nucleus | 28.99 | 69.01 |
| TraesCS2B01G534500.1 | Wheat | nucleus, plastid | 55.62 | 56.97 |
| TraesCS2A01G506100.1 | Wheat | nucleus, plastid | 55.03 | 55.69 |
| TraesCS2D01G506900.1 | Wheat | nucleus, plastid | 54.44 | 55.42 |
| EES11567 | Sorghum | cytosol, plastid | 53.85 | 54.49 |
| Zm00001d026480_P001 | Maize | nucleus | 50.89 | 50.89 |
| GSMUA_Achr7P16390_001 | Banana | nucleus | 51.48 | 49.71 |
| GSMUA_Achr6P03870_001 | Banana | cytosol | 37.28 | 48.84 |
| Bra002729.1-P | Field mustard | nucleus | 45.56 | 48.12 |
| GSMUA_Achr10P... | Banana | nucleus | 47.93 | 47.65 |
| VIT_11s0052g00870.t01 | Wine grape | nucleus | 47.34 | 47.62 |
| Solyc07g019450.2.1 | Tomato | nucleus, plastid | 40.24 | 46.26 |
| PGSC0003DMT400093571 | Potato | nucleus | 31.36 | 45.69 |
| AT5G57420.1 | Thale cress | nucleus, plastid | 46.15 | 45.61 |
| CDY47946 | Canola | nucleus | 46.15 | 44.57 |
| CDY61501 | Canola | nucleus, plastid | 45.56 | 44.0 |
| KRH33583 | Soybean | cytosol, nucleus | 26.04 | 41.51 |
| CDY25909 | Canola | nucleus, plastid | 37.28 | 36.21 |
| CDY38297 | Canola | nucleus, plastid | 37.87 | 35.56 |
| KRG90334 | Soybean | cytosol, plastid | 23.67 | 28.57 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:4337243 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | ProteinID:BAF16020.2 |
| ProteinID:BAS91388.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | InterPro:IPR000270 | EnsemblPlantsGene:Os04g0653300 | EnsemblPlants:Os04t0653300-00 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF7 | UniProt:Q0J9G7 | UniParc:UPI0001B65FE1 | RefSeq:XP_015635277.1 |
| SEG:seg | : | : | : | : | : |
Description
Aux/IAA_ARF_dimerisation domain containing protein. (Os04t0653300-00)
Coordinates
chr4:+:33325306..33325943
Molecular Weight (calculated)
18506.9 Da
IEP (calculated)
9.288
GRAVY (calculated)
-0.587
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MISGAGGEQQ QQQDTKRRLP APTTSEQERR QKQHRGKMLR LSVQQGDDVT AGVVPPVTVV LDGRSICHRV HLSKHTGYRS LAAALRRMFV DADDDVGAAD
101: EAAGRSSCSD ADRGGLDLSN AVPGHVVAYE DIENDLLLAG DLNWKDFVRV ARRIRIIPAK PSSRMRPQS
101: EAAGRSSCSD ADRGGLDLSN AVPGHVVAYE DIENDLLLAG DLNWKDFVRV ARRIRIIPAK PSSRMRPQS
001: MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
Arabidopsis Description
IAA33Auxin-responsive protein IAA33 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.