Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G112440.1 | Barley | cytosol, nucleus | 29.71 | 73.24 |
| GSMUA_Achr10P... | Banana | nucleus | 68.0 | 70.0 |
| GSMUA_Achr6P03870_001 | Banana | cytosol | 49.14 | 66.67 |
| VIT_11s0052g00870.t01 | Wine grape | nucleus | 50.86 | 52.98 |
| TraesCS2B01G534500.1 | Wheat | nucleus, plastid | 49.14 | 52.12 |
| EES11567 | Sorghum | cytosol, plastid | 49.71 | 52.1 |
| Os04t0653300-00 | Rice | nucleus | 49.71 | 51.48 |
| TraesCS2A01G506100.1 | Wheat | nucleus, plastid | 48.57 | 50.9 |
| TraesCS2D01G506900.1 | Wheat | nucleus, plastid | 48.0 | 50.6 |
| Zm00001d026480_P001 | Maize | nucleus | 46.29 | 47.93 |
| CDY47946 | Canola | nucleus | 46.29 | 46.29 |
| Bra002729.1-P | Field mustard | nucleus | 42.29 | 46.25 |
| CDY61501 | Canola | nucleus, plastid | 45.14 | 45.14 |
| AT5G57420.1 | Thale cress | nucleus, plastid | 42.86 | 43.86 |
| PGSC0003DMT400093571 | Potato | nucleus | 28.0 | 42.24 |
| Solyc07g019450.2.1 | Tomato | nucleus, plastid | 34.86 | 41.5 |
| KRH33583 | Soybean | cytosol, nucleus | 22.86 | 37.74 |
| CDY25909 | Canola | nucleus, plastid | 36.0 | 36.21 |
| CDY38297 | Canola | nucleus, plastid | 36.0 | 35.0 |
| KRG90334 | Soybean | cytosol, plastid | 22.86 | 28.57 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr7G16390_001 | EnsemblPlants:GSMUA_Achr7P16390_001 |
| EnsemblPlants:GSMUA_Achr7T16390_001 | InterPro:IPR000270 | UniProt:M0TI26 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF7 | UniParc:UPI000296B695 | SEG:seg | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_52.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G16390_001]
Coordinates
chr7:+:14005382..14005987
Molecular Weight (calculated)
19110.0 Da
IEP (calculated)
8.666
GRAVY (calculated)
-0.347
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNGVALHHG ALKRRWDEKG CLNHGAAHFH QRCGDVGATA APAQPPRPPI GRKLLTLSAM DLDAAASVVP PVTVFLEGRS ICHRVCLDKH TSYESLAKAL
101: RRIFVDVDEG DEHGEGGGKE LQLSNAVPGH VVAYEDMEDD LLLAGDLNWK DFVRVAKRIR IIPAKASRRK QRGGQ
101: RRIFVDVDEG DEHGEGGGKE LQLSNAVPGH VVAYEDMEDD LLLAGDLNWK DFVRVAKRIR IIPAKASRRK QRGGQ
001: MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
Arabidopsis Description
IAA33Auxin-responsive protein IAA33 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.