Factsheet for GSMUA_Achr11P00640_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20000_001
GSMUA_Achr1P20010_001
GSMUA_Achr1P20040_001
GSMUA_Achr2P19760_001
GSMUA_Achr2P22730_001
GSMUA_Achr3P16300_001
GSMUA_Achr4P18240_001
GSMUA_Achr5P03960_001
GSMUA_Achr5P09310_001
GSMUA_Achr5P14630_001
GSMUA_Achr5P18540_001
GSMUA_Achr6P09710_001
GSMUA_Achr6P36980_001
GSMUA_Achr7P13680_001
GSMUA_Achr7P24330_001
GSMUA_Achr8P18400_001
GSMUA_Achr8P18930_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P16800_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	GSMUA_Achr1P20000_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr1P20010_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr1P20040_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr6P36980_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr10P...	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr2P19760_001	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr7P24330_001	AT1G34310.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr4P18240_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P03960_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P14630_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P18540_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr8P18930_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr3P16300_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr5P09310_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr7P13680_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_AchrUn_...	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr10P...	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr2P19760_001	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr7P24330_001	AT3G61830.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr3P16300_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_Achr5P09310_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_Achr7P13680_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT5G25890.1	22096563
AT4G30080.1	GSMUA_Achr8P29850_001	AT3G17600.1	21798944
AT4G30080.1	GSMUA_Achr9P16800_001	AT3G17600.1	21798944
AT4G30080.1	GSMUA_Achr10P...	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr2P22730_001	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr6P09710_001	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr8P18400_001	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P18540_001	Banana	nucleus	63.59	66.28
GSMUA_Achr8P18930_001	Banana	nucleus	69.32	65.44
GSMUA_Achr5P03960_001	Banana	nucleus	67.1	64.94
GSMUA_Achr5P14630_001	Banana	nucleus	64.88	63.7
GSMUA_Achr11P...	Banana	nucleus	70.06	62.75
GSMUA_Achr4P18240_001	Banana	nucleus	68.76	61.28
VIT_08s0040g01810.t01	Wine grape	nucleus	63.4	55.06
VIT_13s0019g04380.t01	Wine grape	nucleus	67.28	53.61
Zm00001d014013_P002	Maize	nucleus	63.22	53.11
VIT_06s0004g02750.t01	Wine grape	nucleus	69.13	52.6
PGSC0003DMT400055522	Potato	nucleus	66.91	52.31
Os06t0685700-01	Rice	nucleus	67.65	52.29
TraesCS1A01G156600.1	Wheat	nucleus	66.36	52.18
Solyc09g007810.2.1	Tomato	nucleus	66.91	52.16
EER94066	Sorghum	nucleus	66.17	51.96
TraesCS1B01G173700.1	Wheat	nucleus	66.36	51.95
TraesCS1D01G155100.1	Wheat	nucleus	65.99	51.89
Zm00001d032683_P001	Maize	nucleus	65.25	51.84
HORVU1Hr1G041770.1	Barley	nucleus	65.8	51.74
TraesCS7B01G346700.1	Wheat	nucleus	66.36	51.73
TraesCS7D01G436800.1	Wheat	nucleus	66.36	51.65
HORVU7Hr1G101270.1	Barley	nucleus	66.36	51.51
CDY43553	Canola	nucleus	57.67	51.06
KRH22880	Soybean	nucleus	63.22	51.04
Os10t0479900-01	Rice	nucleus	65.8	51.0
EER88840	Sorghum	nucleus	66.73	50.92
KRG95987	Soybean	nucleus	65.8	50.86
TraesCS7A01G446900.1	Wheat	nucleus	65.8	50.78
KRH26435	Soybean	nucleus	65.62	50.71
CDX68620	Canola	nucleus	57.67	50.57
KRH32480	Soybean	nucleus	65.25	50.43
KRH25023	Soybean	nucleus	64.69	49.93
Solyc11g069500.1.1	Tomato	nucleus	64.51	49.93
KRH29907	Soybean	nucleus	63.96	49.64
PGSC0003DMT400020874	Potato	nucleus	63.77	49.36
Bra011162.1-P	Field mustard	nucleus	58.96	49.3
AT4G30080.1	Thale cress	nucleus	61.0	49.25
Zm00001d014507_P002	Maize	nucleus	65.62	48.97
Os02t0628600-01	Rice	nucleus	61.37	48.75
Os04t0519700-01	Rice	nucleus	34.94	48.21
Zm00001d000358_P001	Maize	nucleus	62.11	48.0
HORVU5Hr1G024100.1	Barley	cytosol	13.31	47.68
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	9.8	47.32
CDY15734	Canola	nucleus	59.15	47.06
CDY04557	Canola	nucleus	59.52	47.01
AT2G28350.1	Thale cress	nucleus	60.07	46.9
KRG91907	Soybean	nucleus	51.2	46.71
EES05458	Sorghum	nucleus	61.0	46.61
KRH34867	Soybean	nucleus	52.68	46.57
Bra011955.1-P	Field mustard	nucleus	60.44	46.38
Zm00001d017284_P001	Maize	nucleus	60.07	45.97
Solyc06g075150.2.1	Tomato	nucleus	56.93	45.9
PGSC0003DMT400062489	Potato	nucleus	57.12	45.71
TraesCS6A01G222300.1	Wheat	nucleus	56.75	45.68
TraesCS2B01G397300.1	Wheat	nucleus	58.41	44.63
Zm00001d051172_P001	Maize	nucleus	58.23	44.3
TraesCS2D01G376600.1	Wheat	nucleus	58.41	44.26
HORVU2Hr1G089670.1	Barley	nucleus	56.75	43.24
Bra024109.1-P	Field mustard	nucleus	55.27	43.08
TraesCS6B01G258800.1	Wheat	mitochondrion	59.33	42.97
HORVU6Hr1G058890.2	Barley	mitochondrion	59.33	42.29
Solyc10g086130.1.1	Tomato	nucleus	48.61	41.68
TraesCS2A01G380300.1	Wheat	nucleus	31.05	41.58
TraesCS6D01G212700.1	Wheat	plastid	58.96	41.48
KXG36152	Sorghum	nucleus	50.28	41.03
HORVU3Hr1G081710.1	Barley	cytosol	7.95	40.95
KXG26729	Sorghum	nucleus, plastid	51.57	38.64
CDY46728	Canola	nucleus	59.52	38.15
GSMUA_Achr9P29480_001	Banana	nucleus	30.5	36.83
Zm00001d025871_P001	Maize	nucleus	39.37	36.22
CDY30172	Canola	nucleus	55.27	36.02
GSMUA_Achr6P18900_001	Banana	plastid	26.62	35.04
HORVU7Hr1G021880.1	Barley	nucleus	11.83	28.96
GSMUA_Achr10P...	Banana	nucleus	24.77	26.8
HORVU2Hr1G089660.8	Barley	nucleus	16.08	26.77
GSMUA_Achr10P...	Banana	nucleus	26.8	25.22
GSMUA_Achr7P11000_001	Banana	nucleus	24.21	21.91
GSMUA_Achr4P10590_001	Banana	nucleus	28.47	21.57
GSMUA_Achr7P25330_001	Banana	nucleus	26.8	19.95
GSMUA_Achr4P02750_001	Banana	nucleus	25.88	19.5
GSMUA_Achr3P31350_001	Banana	nucleus	26.25	17.91

Protein Annotations

Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	MapMan:35.1	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr11G00640_001	EnsemblPlants:GSMUA_Achr11P00640_001
EnsemblPlants:GSMUA_Achr11T00640_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0RN95	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF39
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000294B4A9	:	:	:

Description

Auxin response factor 18 [Source:GMGC_GENE;Acc:GSMUA_Achr11G00640_001]

Coordinates

chr11:-:395327..399330

Molecular Weight (calculated)

59962.2 Da

IEP (calculated)

7.796

GRAVY (calculated)

-0.352

Length

541 amino acids

Sequence
(BLAST)

001: MKDHDRCLDS QLWHACAGGM VQMPAVNSRV YYFPQGHAEH AQGVVDFGTS RQIPPLILCR VTAVKFMADK ETDEVFAKIQ MVPISNSELD CGEDGCLDLG
101: MNGIDSQEKP TSFAKTLTQS DANNGGGFSV WKFRHIYRGT PRRHLLTTGW SAFVNQKKLV AGDSIVFLRA ENGDLRIGIR RAKRGGVGDG PETPSGWNPP
201: GGSTGGNFTS SRGMRGRCRV TAVSVVEAAT FATRRHPFEV VYYPRANTPE FCVKAAAVTA AIRTRWSPGM RFKMAFETED SSRISWFMGT ISSVEVADPV
301: RWPNSPWRLL QVTWDEPDLL QNVKHVSPWL VELVSHMPAL NLAHFSPPSK RPRIPQHPDF PFESHFPTPM GARHANFGLS LSDLHLNKLQ TGLFHAGFHR
401: LDHATPPSRI STGVIVSNST FHDNNPILTE QQNMNVSDGS GYAIGQKGPC YRNCRNSDLS LETGHCKVFM QSEDVGRTLD LSVFGSYEEL YGTLADMFGI
501: EKSEIMSHVL YKDAAGAIKH TGDEPFCDFI KTARRLTILT D

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.