Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G397300.1 | Wheat | nucleus | 96.29 | 54.94 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 97.03 | 54.9 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 89.11 | 50.7 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 47.52 | 34.85 |
| TraesCS6A01G222300.1 | Wheat | nucleus | 55.45 | 33.33 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 45.54 | 32.92 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 49.01 | 32.62 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 41.83 | 32.56 |
| GSMUA_Achr11P... | Banana | nucleus | 46.78 | 31.29 |
| GSMUA_Achr11P... | Banana | nucleus | 41.58 | 31.05 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 43.81 | 30.89 |
| KXG36152 | Sorghum | nucleus | 49.75 | 30.32 |
| KXG26729 | Sorghum | nucleus, plastid | 51.24 | 28.67 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 46.78 | 27.84 |
| TraesCS7A01G446900.1 | Wheat | nucleus | 48.02 | 27.67 |
| Solyc09g007810.2.1 | Tomato | nucleus | 47.52 | 27.67 |
| PGSC0003DMT400055522 | Potato | nucleus | 47.28 | 27.6 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 47.28 | 26.86 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 41.34 | 26.81 |
| CDY43553 | Canola | nucleus | 40.1 | 26.51 |
| TraesCS1A01G156600.1 | Wheat | nucleus | 44.8 | 26.31 |
| KRH32480 | Soybean | nucleus | 45.54 | 26.29 |
| CDX68620 | Canola | nucleus | 40.1 | 26.26 |
| KRG95987 | Soybean | nucleus | 44.8 | 25.86 |
| KRH29907 | Soybean | nucleus | 44.55 | 25.82 |
| KRH25023 | Soybean | nucleus | 44.55 | 25.68 |
| KRH22880 | Soybean | nucleus | 41.58 | 25.07 |
| Bra011162.1-P | Field mustard | nucleus | 40.1 | 25.04 |
| CDY15734 | Canola | nucleus | 42.08 | 25.0 |
| Solyc11g069500.1.1 | Tomato | nucleus | 43.07 | 24.89 |
| PGSC0003DMT400020874 | Potato | nucleus | 43.07 | 24.89 |
| KRH26435 | Soybean | nucleus | 43.07 | 24.86 |
| CDY04557 | Canola | nucleus | 41.83 | 24.67 |
| AT4G30080.1 | Thale cress | nucleus | 40.59 | 24.48 |
| Bra011955.1-P | Field mustard | nucleus | 41.83 | 23.97 |
| AT2G28350.1 | Thale cress | nucleus | 40.35 | 23.52 |
| Solyc06g075150.2.1 | Tomato | nucleus | 38.86 | 23.4 |
| Bra024109.1-P | Field mustard | nucleus | 40.1 | 23.34 |
| PGSC0003DMT400062489 | Potato | nucleus | 38.86 | 23.22 |
| Zm00001d025871_P001 | Maize | nucleus | 32.43 | 22.28 |
| KRH34867 | Soybean | nucleus | 31.44 | 20.75 |
| CDY30172 | Canola | nucleus | 40.1 | 19.52 |
| CDY46728 | Canola | nucleus | 40.1 | 19.19 |
| KRG91907 | Soybean | nucleus | 27.97 | 19.06 |
| Solyc10g086130.1.1 | Tomato | nucleus | 29.7 | 19.02 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 14.6 | 18.15 |
| Os04t0519700-01 | Rice | nucleus | 13.61 | 14.03 |
| TraesCS2A01G567300.1 | Wheat | nucleus | 13.61 | 10.68 |
| TraesCS3A01G246000.1 | Wheat | nucleus | 16.34 | 9.91 |
| TraesCS1A01G334900.1 | Wheat | nucleus | 17.33 | 9.9 |
| TraesCS3A01G292400.1 | Wheat | nucleus | 14.6 | 9.04 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 2.48 | 8.93 |
| TraesCS1A01G396400.1 | Wheat | nucleus | 15.59 | 8.57 |
| TraesCS7A01G475700.1 | Wheat | nucleus | 6.93 | 7.55 |
| TraesCS7A01G475600.1 | Wheat | nucleus | 6.93 | 7.49 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 1.98 | 5.3 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 0.99 | 1.81 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 0.25 | 0.95 |
Protein Annotations
| Gene3D:2.30.30.1040 | Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:Auxin_resp | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009987 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF06507 |
| PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF37 | EnsemblPlantsGene:TraesCS2A01G380300 | EnsemblPlants:TraesCS2A01G380300.1 | SEG:seg |
Description
No Description!
Coordinates
chr2A:-:623562375..623563835
Molecular Weight (calculated)
43668.3 Da
IEP (calculated)
6.319
GRAVY (calculated)
-0.381
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVQWCPGMR FKMAFETEDS SRISWFMGTV AGIHAADPSR WPQSPWRLLQ VTWDEPELLQ NVKRVCPWLV ELVSSMPNLH LPSFSPPRKK PRIPSYADFP
101: FEGQLFHPPP PPFPPGHHHQ QDQLLHHSFP FFPFPDSNGA PLAGIQGARH AQFGPSFSDL HLSNLQSSLL YAGGAVRRPA ADHVAPRAPR TISTDLTIGT
201: SPAREDDTTT TRAPTKKAGG DVVKPAPTLL LFGQAILTEE QMKSSSTGGD AATSPVAGGC GSPNWDAEKA PNLSEGSGSG SGVIQGSPSN NNNTSSWRLQ
301: WFGDSSSQAA PELLGLEAGQ CKVFVESDAV GRNLDLSALS SFEELYGRMA EMFGMECAEL RNHVLYRSAA GEVKHIGDEP FSAFVKSARR LTILTDAGSD
401: NIGG
101: FEGQLFHPPP PPFPPGHHHQ QDQLLHHSFP FFPFPDSNGA PLAGIQGARH AQFGPSFSDL HLSNLQSSLL YAGGAVRRPA ADHVAPRAPR TISTDLTIGT
201: SPAREDDTTT TRAPTKKAGG DVVKPAPTLL LFGQAILTEE QMKSSSTGGD AATSPVAGGC GSPNWDAEKA PNLSEGSGSG SGVIQGSPSN NNNTSSWRLQ
301: WFGDSSSQAA PELLGLEAGQ CKVFVESDAV GRNLDLSALS SFEELYGRMA EMFGMECAEL RNHVLYRSAA GEVKHIGDEP FSAFVKSARR LTILTDAGSD
401: NIGG
001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
Arabidopsis Description
ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.