Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22160430
golgi: 25769308 unclear: 25769308 plastid: 27562633 |
msms PMID:
22160430
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
27562633
doi
Bio-Tech Research Center, Shandong Academy of Agricultural Science, Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crop, Jinan, 250100, China., The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, 27 Shandanan Road, Jinan, Shandong 250100, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G066700.1 | Wheat | plastid | 90.62 | 100.0 |
| TraesCS2D01G065300.1 | Wheat | plastid | 90.1 | 99.43 |
| HORVU2Hr1G010630.1 | Barley | plastid | 88.54 | 97.14 |
| HORVU2Hr1G010690.1 | Barley | plastid | 88.54 | 97.14 |
| TraesCS2A01G067300.1 | Wheat | plastid | 88.54 | 97.14 |
| TraesCS2A01G067200.1 | Wheat | plastid | 88.02 | 96.57 |
| TraesCS2A01G067100.1 | Wheat | plastid | 88.02 | 96.57 |
| TraesCS2A01G066800.1 | Wheat | plastid | 87.5 | 96.0 |
| TraesCS2A01G067000.1 | Wheat | plastid | 86.46 | 94.86 |
| TraesCS5A01G165700.1 | Wheat | plastid | 85.42 | 93.71 |
| TraesCS5A01G165400.2 | Wheat | plastid | 85.42 | 93.71 |
| HORVU2Hr1G010670.1 | Barley | plastid | 90.62 | 91.58 |
| Os12t0291400-01 | Rice | plastid | 76.04 | 83.43 |
| Os12t0292400-01 | Rice | extracellular | 75.52 | 82.86 |
| Os12t0274700-01 | Rice | plastid | 75.0 | 82.29 |
| Os12t0291100-01 | Rice | plastid | 74.48 | 81.71 |
| Zm00001d052595_P001 | Maize | plastid | 68.75 | 77.65 |
| Zm00001d004894_P001 | Maize | plastid | 68.23 | 77.06 |
| GSMUA_Achr8P18400_001 | Banana | cytosol | 10.42 | 76.92 |
| EES09292 | Sorghum | plastid | 66.67 | 75.74 |
| GSMUA_Achr10P... | Banana | plasma membrane | 58.85 | 71.52 |
| GSMUA_Achr6P09710_001 | Banana | plastid | 58.33 | 70.89 |
| PGSC0003DMT400067905 | Potato | plastid | 57.29 | 69.18 |
| GSMUA_Achr2P22730_001 | Banana | unclear | 56.77 | 68.99 |
| PGSC0003DMT400032975 | Potato | mitochondrion, plastid | 60.94 | 65.0 |
| Bra028181.1-P | Field mustard | plastid | 53.12 | 62.96 |
| PGSC0003DMT400050381 | Potato | cytosol, extracellular, plastid | 58.33 | 61.88 |
| PGSC0003DMT400062138 | Potato | cytosol, plastid | 58.33 | 61.88 |
| Solyc02g085950.2.1 | Tomato | extracellular | 57.81 | 61.67 |
| AT1G67090.1 | Thale cress | plastid | 57.81 | 61.67 |
| Solyc02g063150.2.1 | Tomato | nucleus, plastid | 57.81 | 61.33 |
| AT5G38420.1 | Thale cress | plastid | 57.81 | 61.33 |
| Solyc03g034220.2.1 | Tomato | plastid | 57.29 | 61.11 |
| KRH18247 | Soybean | nucleus, plastid | 56.25 | 60.67 |
| KRG93867 | Soybean | plastid | 56.25 | 60.67 |
| KRG93871 | Soybean | plastid | 56.25 | 60.67 |
| Os12t0291200-00 | Rice | plastid | 30.21 | 60.42 |
| AT5G38430.1 | Thale cress | plastid | 56.77 | 60.22 |
| AT5G38410.3 | Thale cress | plastid | 58.33 | 60.22 |
| Bra028174.1-P | Field mustard | plastid | 56.25 | 59.67 |
| CDY71122 | Canola | plastid | 56.25 | 59.67 |
| CDY52468 | Canola | plastid | 56.25 | 59.67 |
| CDY01665 | Canola | plastid | 56.25 | 59.67 |
| CDY67657 | Canola | plastid | 55.73 | 59.12 |
| Bra025431.1-P | Field mustard | plastid | 55.73 | 59.12 |
| CDX74525 | Canola | plastid | 55.73 | 59.12 |
| CDX74532 | Canola | plastid | 55.73 | 59.12 |
| CDY01671 | Canola | plastid | 55.73 | 59.12 |
| Bra034027.1-P | Field mustard | plastid | 55.21 | 58.56 |
| Bra034029.1-P | Field mustard | plastid | 55.21 | 58.56 |
| CDX67402 | Canola | plastid | 55.21 | 58.56 |
| CDY12613 | Canola | plastid | 55.21 | 58.56 |
| CDY42338 | Canola | plastid | 55.21 | 58.56 |
| VIT_17s0000g03690.t01 | Wine grape | plastid | 54.69 | 58.33 |
| Bra028406.1-P | Field mustard | plastid | 54.69 | 58.01 |
| CDY12616 | Canola | plastid | 53.65 | 56.91 |
| Bra034024.1-P | Field mustard | plastid | 53.65 | 56.91 |
| CDX99682 | Canola | plastid | 55.73 | 56.61 |
| CDY42337 | Canola | plastid | 53.12 | 56.35 |
| CDY12612 | Canola | cytosol | 34.9 | 55.37 |
| CDY42341 | Canola | plastid | 52.08 | 53.76 |
| KRG93872 | Soybean | plastid | 36.46 | 51.85 |
| KRH46925 | Soybean | plastid | 23.96 | 51.11 |
| KRG93873 | Soybean | plastid | 27.08 | 49.52 |
| KRH01757 | Soybean | plastid | 36.98 | 47.33 |
| KRG99965 | Soybean | plastid | 30.21 | 44.27 |
| KRG99964 | Soybean | plastid | 22.4 | 43.0 |
| KRH15458 | Soybean | plastid | 29.69 | 35.85 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G066900.1 | EnsemblPlantsGene:TraesCS2A01G066900 | Gene3D:3.30.190.10 | InterPro:IPR036385 | InterPro:RuBisCO_sc | InterPro:RuBisCO_sc_dom |
| InterPro:RuBisCO_ssu_N | InterPro:RuBisCO_ssu_sf | KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | PANTHER:PTHR31262 | PANTHER:PTHR31262:SF0 |
| PFAM:PF00101 | PFAM:PF12338 | PRINTS:PR00152 | SEG:seg | SMART:SM00961 | SUPFAM:SSF55239 |
| TIGR:cd03527 | MapMan:1.2.1.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:30071632..30072776
Molecular Weight (calculated)
21125.4 Da
IEP (calculated)
8.461
GRAVY (calculated)
-0.109
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSTVAGIL LSSDNTNTMA PAVMASSATT VAPFQGLKST AGLPVSRRSS GSLGSVSNGG RIRCMQVWPI EGIKKFETLS YLPPLSTEAL LKQVDYLIRS
101: KWVPCLEFSK VGFVFREHNS SPGYYDGRYW TMWKLPMFGC TDATQVLNEV EEVKKEYPDA YVRVIGFDNL RQVQCVSFIA FRPPGCEESG KA
101: KWVPCLEFSK VGFVFREHNS SPGYYDGRYW TMWKLPMFGC TDATQVLNEV EEVKKEYPDA YVRVIGFDNL RQVQCVSFIA FRPPGCEESG KA
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.