CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX74820
CDX78461
CDX79940
CDX80461
CDX83145
CDX86457
CDX90032
CDX90879
CDX91181
CDX92171
CDX94586
CDX95810
CDY05402
CDY05452
CDY06929
CDY14765
CDY15177
CDY16639
CDY20500
CDY21133
CDY21319
CDY23854
CDY29989
CDY34012
CDY58518
CDY67814
CDY68624
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38420.1	CDX90032	AT1G01440.1	21798944
AT5G38420.1	CDY15177	AT1G01440.1	21798944
AT5G38420.1	CDX79940	AT2G41370.1	21798944
AT5G38420.1	CDY06929	AT2G41370.1	21798944
AT5G38420.1	CDY14765	AT2G41370.1	21798944
AT5G38420.1	CDY23854	AT2G41370.1	21798944
AT5G38420.1	CDY21133	AT3G04240.1	21798944
AT5G38420.1	CDY29989	AT3G04240.1	21798944
AT5G38420.1	CDX92171	AT3G17860.1	21798944
AT5G38420.1	CDX95810	AT3G17860.1	21798944
AT5G38420.1	CDX86457	AT3G27960.1	21798944
AT5G38420.1	CDY58518	AT3G27960.1	21798944
AT5G38420.1	CDX90879	AT4G04890.1	21798944
AT5G38420.1	CDX94586	AT4G04890.1	21798944
AT5G38420.1	CDY16639	AT4G04890.1	21798944
AT5G38420.1	CDY21319	AT4G04890.1	21798944
AT5G38420.1	CDX83145	AT4G08150.1	21798944
AT5G38420.1	CDY34012	AT4G08150.1	21798944
AT5G38420.1	CDY68624	AT4G08150.1	21798944
AT5G38420.1	CDX70438	AT5G11980.1	21798944
AT5G38420.1	CDX78461	AT5G11980.1	21798944
AT5G38420.1	CDX91181	AT5G11980.1	21798944
AT5G38420.1	CDY67814	AT5G11980.1	21798944
AT5G38420.1	CDX80461	AT5G24660.1	21798944
AT5G38420.1	CDY05402	AT5G24660.1	21798944
AT5G38420.1	CDY05452	AT5G24660.1	21798944
AT5G38420.1	CDY69515	AT5G24660.1	21798944
AT5G38430.1	CDX74820	AT2G39930.1	21798944
AT5G38430.1	CDY20500	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025431.1-P	Field mustard	plastid	98.89	98.89
CDY71122	Canola	plastid	97.24	97.24
CDY01671	Canola	plastid	96.13	96.13
CDX67402	Canola	plastid	96.13	96.13
CDX74532	Canola	plastid	96.13	96.13
CDX74525	Canola	plastid	95.58	95.58
CDY01665	Canola	plastid	94.48	94.48
CDX99682	Canola	plastid	98.34	94.18
CDY67657	Canola	plastid	93.92	93.92
AT5G38430.1	Thale cress	plastid	93.37	93.37
AT5G38420.1	Thale cress	plastid	91.71	91.71
AT5G38410.3	Thale cress	plastid	93.92	91.4
CDY12613	Canola	plastid	88.4	88.4
CDY42337	Canola	plastid	84.53	84.53
CDY12616	Canola	plastid	83.98	83.98
CDY42338	Canola	plastid	83.98	83.98
CDY42341	Canola	plastid	80.66	78.49
GSMUA_Achr8P18400_001	Banana	cytosol	11.05	76.92
PGSC0003DMT400062138	Potato	cytosol, plastid	75.14	75.14
PGSC0003DMT400067905	Potato	plastid	65.75	74.84
GSMUA_Achr10P...	Banana	plasma membrane	65.19	74.68
GSMUA_Achr2P22730_001	Banana	unclear	65.19	74.68
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	74.59	74.59
PGSC0003DMT400032975	Potato	mitochondrion, plastid	74.03	74.44
VIT_17s0000g03690.t01	Wine grape	plastid	74.03	74.44
Solyc03g034220.2.1	Tomato	plastid	73.48	73.89
Solyc02g085950.2.1	Tomato	extracellular	73.48	73.89
GSMUA_Achr6P09710_001	Banana	plastid	63.54	72.78
Solyc02g063150.2.1	Tomato	nucleus, plastid	72.38	72.38
KRH46925	Soybean	plastid	35.91	72.22
CDY12612	Canola	cytosol	46.96	70.25
Os12t0292400-01	Rice	extracellular	61.33	63.43
Os12t0291400-01	Rice	plastid	61.33	63.43
Os12t0274700-01	Rice	plastid	61.33	63.43
Zm00001d004894_P001	Maize	plastid	59.12	62.94
Os12t0291100-01	Rice	plastid	60.77	62.86
TraesCS2B01G079200.1	Wheat	plastid	60.22	62.29
TraesCS2D01G065200.1	Wheat	plastid	60.22	62.29
HORVU2Hr1G010630.1	Barley	plastid	60.22	62.29
HORVU2Hr1G010690.1	Barley	plastid	60.22	62.29
EES09292	Sorghum	plastid	58.01	62.13
TraesCS2D01G065300.1	Wheat	plastid	59.67	62.07
TraesCS2B01G079300.1	Wheat	plastid	59.67	62.07
TraesCS2A01G066700.1	Wheat	plastid	59.67	62.07
HORVU1Hr1G035720.2	Barley	plastid	60.22	61.93
TraesCS2D01G065500.1	Wheat	plastid	56.35	61.82
Zm00001d052595_P001	Maize	plastid	58.01	61.76
TraesCS2B01G079400.1	Wheat	plastid	59.67	61.71
HORVU5Hr1G033540.2	Barley	plastid	59.67	61.71
HORVU5Hr1G038630.1	Barley	plastid	59.67	61.71
TraesCS2A01G066800.1	Wheat	plastid	59.67	61.71
HORVU5Hr1G051010.2	Barley	plastid	59.67	61.71
TraesCS2A01G067200.1	Wheat	plastid	59.67	61.71
TraesCS2A01G067300.1	Wheat	plastid	59.67	61.71
TraesCS2D01G065600.1	Wheat	plastid	59.67	61.71
TraesCS2B01G079100.1	Wheat	plastid	59.12	61.49
TraesCS2D01G065400.1	Wheat	plastid	59.12	61.14
TraesCS2A01G067100.1	Wheat	plastid	59.12	61.14
TraesCS5A01G165400.2	Wheat	plastid	59.12	61.14
TraesCS5A01G165700.1	Wheat	plastid	59.12	61.14
TraesCS5B01G162600.1	Wheat	plastid	59.12	61.14
TraesCS5B01G162800.1	Wheat	plastid	59.12	61.14
TraesCS5D01G169600.2	Wheat	plastid	59.12	61.14
TraesCS5D01G169900.2	Wheat	plastid	59.12	61.14
TraesCS2D01G065100.2	Wheat	plastid	58.56	60.92
KRH01757	Soybean	plastid	50.28	60.67
TraesCS2A01G067000.1	Wheat	plastid	58.01	60.0
KRG99964	Soybean	plastid	32.04	58.0
TraesCS2B01G078900.2	Wheat	plastid	59.12	57.84
HORVU2Hr1G010670.1	Barley	plastid	60.22	57.37
TraesCS2A01G066900.1	Wheat	plastid	59.67	56.25
TraesCS2B01G079500.1	Wheat	plastid	59.67	55.96
KRG99965	Soybean	plastid	40.33	55.73
Os12t0291200-00	Rice	plastid	25.41	47.92
HORVU5Hr1G050990.4	Barley	plastid	50.28	47.4
KRH15458	Soybean	plastid	40.33	45.91
HORVU7Hr1G048050.2	Barley	plastid	18.23	37.5

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	GO:A0A078ITU8	UniProt:A0A078ITU8
EnsemblPlants:CDY52468	ProteinID:CDY52468	ProteinID:CDY52468.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979
GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00007060001	InterPro:IPR036385
PFAM:PF00101	PFAM:PF12338	PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	MetaCyc:PWY-5532
MetaCyc:PWY-5723	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961
SUPFAM:SSF55239	UniParc:UPI0001CAA507	SEG:seg	:	:	:

Description

BnaA04g27920DRibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A078ITU8]

Coordinates

chrLK033093:+:42004..43059

Molecular Weight (calculated)

20159.1 Da

IEP (calculated)

8.187

GRAVY (calculated)

-0.160

Length

181 amino acids

Sequence
(BLAST)

001: MASSMLSSAA VATSPAQATM VAPFTGLKSS AAFPVTRKSN TDITSIASNG GRVSCMKVWP PVGKKKFETL SYLPDLTDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GSTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVQECKTEYP NAFIRIIGFD NNRQVQCISF IAYKPPSFTG A

Best Arabidopsis Sequence Match ( AT5G38410.1 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A

Arabidopsis Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.