CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74820	Canola	plastid	97.32	96.95
Bra005001.1-P	Field mustard	plastid	97.07	94.18
AT2G39930.1	Thale cress	plastid	86.1	86.21
PGSC0003DMT400053345	Potato	cytosol	29.59	80.0
VIT_11s0078g00310.t01	Wine grape	extracellular, golgi	52.81	76.81
Solyc07g014590.2.1	Tomato	extracellular	71.68	71.41
KRH41413	Soybean	plastid	70.54	69.3
Os08t0520900-00	Rice	cytosol, plastid	63.78	68.97
GSMUA_Achr9P14020_001	Banana	plasma membrane, vacuole	58.67	65.9
TraesCS7A01G251400.1	Wheat	mitochondrion, plastid	64.92	64.43
TraesCS7B01G139700.2	Wheat	plastid	64.67	64.18
TraesCS7D01G249500.1	Wheat	mitochondrion, plastid	64.67	64.1
KXG25605	Sorghum	plastid	63.39	62.75
HORVU7Hr1G051710.1	Barley	vacuole	36.61	56.94
Zm00001d049753_P001	Maize	mitochondrion, plastid	55.36	52.04
VIT_11s0078g00380.t01	Wine grape	cytosol	19.52	49.51
CDY05042	Canola	cytosol	15.56	44.36
CDX90708	Canola	plastid	40.18	41.89
CDY70211	Canola	plastid	28.7	40.76
CDX77333	Canola	cytosol	5.23	39.05
CDX77349	Canola	mitochondrion	18.62	37.44
Zm00001d052844_P001	Maize	cytosol	7.65	35.09
CDY60217	Canola	extracellular	6.51	29.65
CDY15458	Canola	cytosol	26.91	28.79
CDY18165	Canola	plastid	26.79	25.67
CDX89902	Canola	plastid	26.79	24.94
CDX86680	Canola	plastid	25.26	23.91
Zm00001d050532_P001	Maize	extracellular	8.8	17.0
Zm00001d016045_P001	Maize	plastid	6.76	14.36
Zm00001d024985_P004	Maize	plastid	3.95	13.78
CDX70233	Canola	plastid	13.01	10.59
CDY51316	Canola	plastid	12.88	10.41
CDY47998	Canola	cytosol	4.97	6.0

Protein Annotations

Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80	GO:A0A078G1U4
UniProt:A0A078G1U4	EnsemblPlants:CDY20500	ProteinID:CDY20500	ProteinID:CDY20500.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00012604001
InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00128	PFAM:PF02922	PANTHER:PTHR43002	PANTHER:PTHR43002:SF1
SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI0004EDBD14	SEG:seg

Description

BnaC04g05440DBnaC04g05440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1U4]

Coordinates

chrLK032108:+:541940..547488

Molecular Weight (calculated)

88977.7 Da

IEP (calculated)

5.194

GRAVY (calculated)

-0.367

Length

784 amino acids

Sequence
(BLAST)

001: MDAIKCSSTF LPLTNPNTLF SNHTFPKFPA PNFNRRAAQP LSISAKDTRT TEPENVAVVE KPPLSKRFLV SDGLTSPFGA TVRDDGVNFS VYSSNSVSAT
101: ICLISLSDLR QNKVTEEIDL DPSTNRTGHV WHVFLKGSFE DMLYGYRFDG KFSPQEGHYY DSSNILLDPY AKAIISRDEF GVLEADDNCW PQMACMVPTL
201: GEEFDWEGDM PLKLSQKDLV IYEMHVRGFT RHESSDIEFP GTYQGVAEKL DHLQELGINC IELMPCHEFN ELEYYSYNPI LGDHRVNFWG YSTIGFFSPM
301: VRYSSASSRN FAGRAINEFK TLVKEAHKRG IEVIMDVVLN HTAEGNEKGP ILSFRGVDNS VYYMLAPKGE FYNYSGCGNT FNCNHPVVRQ FIVDCLRYWV
401: TEMHVDGFRF DLGSIMSRSS SLWDAANVYG ADVEGDLLTT GTPVSCPPVI DMISNDPVLR GVKLIAEAWD AGGLYQVGMF PHWGIWSEWN GKFRDVVRHF
501: IKGTDGFSGA FAECLCGSPN LYQGGRKPWN SINFVCAHDG FTMADLVTYN NKSNLANGEE NNDGENHNCS WNCGEEGDFV SISVKRLRKR QMRNFFVSLM
601: VAQGVPMIYM GDEYGHTKGG NNNTYCHDNY LNYFRWDKKE EAHDDYFRFC RLLIKFRDEC ESLGLDDFPT AKRLQWHGIT PETPDWSETS RFVAFSLVDS
701: VKKEIYVGFN TSHLATLVTL PNRPGYRWEP FVDTSKPSPF DCITHDLPGR ETAMKQYRHF LDANMYPMLS YSSIILLLSP IDDS

Best Arabidopsis Sequence Match ( AT2G39930.1 )
(BLAST)

001: MDAIKCSSSF LHHTKLNTLF SNHTFPKISA PNFKPLFRPI SISAKDRRSN EAENIAVVEK PLKSDRFFIS DGLPSPFGPT VRDDGVNFSV YSTNSVSATI
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQGVPMIYMG DEYGHTKGGN NNTYCHDNYM NYFRWDKKEE AHSDFFRFCR ILIKFRDECE SLGLNDFPTA KRLQWHGLAP EIPNWSETSR FVAFSLVDSV
701: KKEIYVAFNT SHLATLVSLP NRPGYRWEPF VDTSKPSPYD CITPDLPERE TAMKQYRHFL DANVYPMLSY SSIILLLSPI KDP

Arabidopsis Description

ISA1ISA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.