CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000667.1-P	Field mustard	plastid	92.29	96.39
CDY05042	Canola	cytosol	35.11	96.0
CDY70211	Canola	plastid	66.36	90.4
AT4G09020.1	Thale cress	plastid	84.04	82.72
CDX77349	Canola	mitochondrion	39.63	76.41
PGSC0003DMT400018765	Potato	cytosol	22.07	72.49
GSMUA_Achr9P14980_001	Banana	cytosol	66.22	69.65
KRH53006	Soybean	plastid	70.21	68.39
VIT_18s0001g06520.t01	Wine grape	plastid	69.68	67.61
CDX77333	Canola	cytosol	9.31	66.67
KRH62296	Soybean	plastid	69.41	66.67
Os09t0469400-01	Rice	plastid	29.52	65.49
KXG35819	Sorghum	plastid	67.55	65.46
TraesCS5A01G248700.1	Wheat	plastid	67.29	65.29
HORVU5Hr1G070160.1	Barley	plastid	67.15	65.08
TraesCS5D01G255800.1	Wheat	plastid	67.15	65.08
TraesCS5B01G246400.1	Wheat	plastid	67.02	64.95
Solyc06g009220.2.1	Tomato	plastid	62.77	63.87
PGSC0003DMT400018766	Potato	cytosol	17.69	53.85
CDY60217	Canola	extracellular	11.57	50.58
CDX74820	Canola	plastid	42.29	40.41
CDY20500	Canola	plastid	41.89	40.18
CDY15458	Canola	cytosol	30.85	31.65
CDY18165	Canola	plastid	30.85	28.36
CDX89902	Canola	plastid	30.72	27.43
CDX86680	Canola	plastid	29.26	26.57
Zm00001d005948_P001	Maize	golgi, plasma membrane, plastid	13.56	24.4
CDY51316	Canola	plastid	15.16	11.75
CDX70233	Canola	plastid	15.03	11.73
CDY47998	Canola	cytosol	6.65	7.69

Protein Annotations

Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80	GO:A0A078DU62
EnsemblPlants:CDX90708	ProteinID:CDX90708	ProteinID:CDX90708.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00151381001	InterPro:Glyco_hydro_13_N
InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	PFAM:PF00128	PFAM:PF02922	PANTHER:PTHR43002	SMART:SM00642	SUPFAM:SSF51011
SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI0004EEF80C	SEG:seg	:	:

Description

BnaA03g23880D

Coordinates

chrLK031864:+:80961..85417

Molecular Weight (calculated)

84906.7 Da

IEP (calculated)

6.050

GRAVY (calculated)

-0.422

Length

752 amino acids

Sequence
(BLAST)

001: MLASPSYSRA ASRFPPALHS SGNVFTGFIP IRRVTGAQVC TRRSTLKVTC RRARERVIEE ESSQMAETNK QSFKVSSGEK SPLGVSQVDK GINFALFSHN
101: ATSVTLCLSL PQSDKEDDVD VVELVLDPSI NKTGDTWHIC VEDLPLRNVL YGYRVDGSGE WNQGHRFDRS ILLLDPYAKL VKGRSFFGDS SQKFAQFYGT
201: YDFETSPFDW GDDYKFPNIP EKDLVIYEMN VRAFTADESS GIDPSIAGSY LALIEKIPHL LDLGINAVEL LPVFEFDELE LQRRPNPRDH MVNTWGYSTV
301: NFFAPMSRYA SGEGDPIKAS KEFKEMVKAL HSAGIEVILD VVYNHTNEAD DKYPYTTSFR GIDNKIYYML DPNNQLLNYS GCGNTLNCNH PVVMELILDS
401: LKHWVTEYHV DGFRFDLASV LCRDTDGSPL SAPPLIRAIA KDSVLSRCKI IAEPWDCGGL YLVGKFPNWD RWAEWNGMYR DDVRRFIKGD CGMKGSFATR
501: VSGSSDLYQV NQRKPYHGVN FIIAHDGFTL RDLVTYNSKH NEANGEGGND GCNDNYSWNC GSEGETGDAH IKSLRVRQMK NFHLALMISQ GTPMMLMGDE
601: YGHSRYGNNN SYGHDTALNN FQWKEASLNI SRHFRFFSEL IKFRHSHHVL KHENFLSKGE ITWHEDNWDN SESKFLAFTL HDGVNGQDVY AAFNAHDYFV
701: KALIPLPPSG KQWFRVADTN LESPDDFVKE GVAGVAEAYN VASFSSILLK SM

Best Arabidopsis Sequence Match ( AT4G09020.1 )
(BLAST)

001: MLTSPSSSST YDPFSSNFSP SLTNAFSSSF TIPMGLKLSR RVTRARIFSR KIKDRSTLKV TCRRAHERVV EEEASTMTET KLFKVSSGEV SPLGVSQVDK
101: GINFALFSQN ATSVTLCLSL SQSGKDDTDD DGMIELVLDP SVNKTGDTWH ICVEDLPLNN VLYGYRVDGP GEWQQGHRFD RSILLLDPYA KLVKGHSSFG
201: DSSQKFAQFY GTYDFESSPF DWGDDYKFPN IPEKDLVIYE MNVRAFTADE SSGMDPAIGG SYLGFIEKIP HLQDLGINAV ELLPVFEFDE LELQRRSNPR
301: DHMVNTWGYS TVNFFAPMSR YASGEGDPIK ASKEFKEMVK ALHSAGIEVI LDVVYNHTNE ADDKYPYTTS FRGIDNKVYY MLDPNNQLLN FSGCGNTLNC
401: NHPVVMELIL DSLRHWVTEY HVDGFRFDLA SVLCRATDGS PLSAPPLIRA IAKDSVLSRC KIIAEPWDCG GLYLVGKFPN WDRWAEWNGM YRDDVRRFIK
501: GDSGMKGSFA TRVSGSSDLY QVNQRKPYHG VNFVIAHDGF TLRDLVSYNF KHNEANGEGG NDGCNDNHSW NCGFEGETGD AHIKSLRTRQ MKNFHLALMI
601: SQGTPMMLMG DEYGHTRYGN NNSYGHDTSL NNFQWKELDA KKQNHFRFFS EVIKFRHSHH VLKHENFLTQ GEITWHEDNW DNSESKFLAF TLHDGIGGRD
701: IYVAFNAHDY FVKALIPQPP PGKQWFRVAD TNLESPDDFV REGVAGVADT YNVAPFSSIL LQSK

Arabidopsis Description

ISA3Isoamylase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0S5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.