Factsheet for VIT_18s0001g06520.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018765	Potato	cytosol	22.45	75.98
KRH53006	Soybean	plastid	74.06	74.35
KRH62296	Soybean	plastid	74.84	74.07
GSMUA_Achr9P14980_001	Banana	cytosol	67.61	73.29
CDY05042	Canola	cytosol	25.68	72.36
AT4G09020.1	Thale cress	plastid	69.55	70.55
Solyc06g009220.2.1	Tomato	plastid	66.58	69.82
CDX90708	Canola	plastid	67.61	69.68
Bra000667.1-P	Field mustard	plastid	64.65	69.58
CDY70211	Canola	plastid	48.13	67.57
Os09t0469400-01	Rice	plastid	29.42	67.26
KXG35819	Sorghum	plastid	66.84	66.75
TraesCS5D01G255800.1	Wheat	plastid	66.58	66.49
TraesCS5B01G246400.1	Wheat	plastid	66.32	66.24
HORVU5Hr1G070160.1	Barley	plastid	66.19	66.11
TraesCS5A01G248700.1	Wheat	plastid	65.42	65.42
PGSC0003DMT400018766	Potato	cytosol	19.35	60.73
CDX77333	Canola	cytosol	8.13	60.0
Bra014108.1-P	Field mustard	cytosol	15.87	59.42
CDX77349	Canola	mitochondrion	29.42	58.46
Bra014111.1-P	Field mustard	mitochondrion	10.32	55.94
CDY60217	Canola	extracellular	10.32	46.51
VIT_11s0078g00310.t01	Wine grape	extracellular, golgi	31.1	44.71
VIT_07s0104g00370.t01	Wine grape	plasma membrane, plastid, vacuole	31.61	27.78
VIT_11s0078g00380.t01	Wine grape	cytosol	10.58	26.54
Zm00001d005948_P001	Maize	golgi, plasma membrane, plastid	13.03	24.16
VIT_13s0019g05160.t01	Wine grape	plastid	14.19	11.51

Protein Annotations

EntrezGene:100255802	wikigene:100255802	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1
Gene3D:3.20.20.80	ProteinID:CBI19205	ProteinID:CBI19205.3	UniProt:E0CRQ1	EMBL:FN595227	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	EntrezGene:LOC100255802	wikigene:LOC100255802	PFAM:PF00128	PFAM:PF02922
PANTHER:PTHR43002	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	TIGR:TC58708
UniParc:UPI0001BE156B	ArrayExpress:VIT_18s0001g06520	EnsemblPlantsGene:VIT_18s0001g06520	EnsemblPlants:VIT_18s0001g06520.t01	unigene:Vvi.3072	RefSeq:XP_002284042
RefSeq:XP_002284042.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:4900037..4954270

Molecular Weight (calculated)

87922.9 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.428

Length

775 amino acids

Sequence
(BLAST)

001: MIHPLVGESN AKFPLFSALS NRDSGASSFG TSRIIGMGLL LSKKVSGSNM KRTVSKTWDC LRPRTTNAYG RHAQDRVLEE EAPQIAETSP SLKVLPGQAF
101: PLGVSEVENG INFAIFSQHA TAIVLCLFLP QRGKKDRMDD LMVELTLDAD VNRTGDIWHI CVEDLPRSNV LYGYCIDGPR DWHQGHRFDN STVLIDPYAK
201: LVEGRRFFGD ASNKWSKFLG TYDFDSLPFD WGDNYKVPSI PEKDLVIYEM NVRAFTADKS SGLDPNVRGS YLGVIEKIPH LLDLGINAVE LLPVFEFDEF
301: EFQRRPNPRD HMINTWGYST INFFAPMSRY ASAGGGPIKA SREFKEMVKA LHGAGIEVIL DVVYNHTNEA DDENPYTTSF RGIDNKVYYM VDLNNEGQLL
401: NFSGCGNTLN CNHPMVMELI LDSLRHWVIE YHVDGFRFDL ASVLCRGTDG SPLNAPPIIR EIAKDDILSR CKIIAEPWDC GGLYLVGRFP NWDRWAEWNG
501: KYRDDLRRFI KGDPGTKGNF ATRVAGSSDL YKVNKRKPYH SVNFVIAHDG FTLYDLVSYN SKHNNANGEG GKDGTNDNFS WNCGFEGETA DAKIKALRSR
601: QMKNFHLALM CSQGTPMMLM GDEYGHTRYG NNNSYGHDTA INHFLWGQLD SRKRDRFRFF KEVIKFRRMH HVFGRENFLE KKDVTWHEDN WDNYESKFLA
701: FTLHANNGGD IYLAFNTHDF FVKVAIPSPP ANRRWFRVVD TNLESPKDFV SEGVPGIGSA YNVAPYSSIL LEAKL

Best Arabidopsis Sequence Match ( AT4G09020.1 )
(BLAST)

001: MLTSPSSSST YDPFSSNFSP SLTNAFSSSF TIPMGLKLSR RVTRARIFSR KIKDRSTLKV TCRRAHERVV EEEASTMTET KLFKVSSGEV SPLGVSQVDK
101: GINFALFSQN ATSVTLCLSL SQSGKDDTDD DGMIELVLDP SVNKTGDTWH ICVEDLPLNN VLYGYRVDGP GEWQQGHRFD RSILLLDPYA KLVKGHSSFG
201: DSSQKFAQFY GTYDFESSPF DWGDDYKFPN IPEKDLVIYE MNVRAFTADE SSGMDPAIGG SYLGFIEKIP HLQDLGINAV ELLPVFEFDE LELQRRSNPR
301: DHMVNTWGYS TVNFFAPMSR YASGEGDPIK ASKEFKEMVK ALHSAGIEVI LDVVYNHTNE ADDKYPYTTS FRGIDNKVYY MLDPNNQLLN FSGCGNTLNC
401: NHPVVMELIL DSLRHWVTEY HVDGFRFDLA SVLCRATDGS PLSAPPLIRA IAKDSVLSRC KIIAEPWDCG GLYLVGKFPN WDRWAEWNGM YRDDVRRFIK
501: GDSGMKGSFA TRVSGSSDLY QVNQRKPYHG VNFVIAHDGF TLRDLVSYNF KHNEANGEGG NDGCNDNHSW NCGFEGETGD AHIKSLRTRQ MKNFHLALMI
601: SQGTPMMLMG DEYGHTRYGN NNSYGHDTSL NNFQWKELDA KKQNHFRFFS EVIKFRHSHH VLKHENFLTQ GEITWHEDNW DNSESKFLAF TLHDGIGGRD
701: IYVAFNAHDY FVKALIPQPP PGKQWFRVAD TNLESPDDFV REGVAGVADT YNVAPFSSIL LQSK

Arabidopsis Description

ISA3Isoamylase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0S5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.