Factsheet for Solyc06g009220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018765	Potato	cytosol	25.85	83.41
GSMUA_Achr9P14980_001	Banana	cytosol	65.76	67.97
Os09t0469400-01	Rice	plastid	30.72	66.96
VIT_18s0001g06520.t01	Wine grape	plastid	69.82	66.58
KRH53006	Soybean	plastid	69.15	66.19
KRH62296	Soybean	plastid	69.15	65.26
KXG35819	Sorghum	plastid	67.25	64.05
AT4G09020.1	Thale cress	plastid	65.09	62.96
CDX90708	Canola	plastid	63.87	62.77
TraesCS5D01G255800.1	Wheat	plastid	65.76	62.63
TraesCS5B01G246400.1	Wheat	plastid	65.76	62.63
CDY05042	Canola	cytosol	23.27	62.55
HORVU5Hr1G070160.1	Barley	plastid	65.49	62.37
TraesCS5A01G248700.1	Wheat	plastid	65.22	62.19
CDY70211	Canola	plastid	46.41	62.14
Bra000667.1-P	Field mustard	plastid	60.49	62.08
CDX77333	Canola	cytosol	8.39	59.05
Bra014111.1-P	Field mustard	mitochondrion	10.55	54.55
CDX77349	Canola	mitochondrion	27.33	51.79
Bra014108.1-P	Field mustard	cytosol	13.13	46.86
CDY60217	Canola	extracellular	10.42	44.77
Solyc07g014590.2.1	Tomato	extracellular	43.17	40.53
Solyc09g064800.1.1	Tomato	plastid	30.18	25.75
Zm00001d005948_P001	Maize	golgi, plasma membrane, plastid	14.48	25.6
Solyc11g008050.1.1	Tomato	cytosol	11.91	19.26
Solyc11g008060.1.1	Tomato	plastid	5.82	14.05
Solyc11g008040.1.1	Tomato	mitochondrion	0.81	4.92

Protein Annotations

Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:K4C3V2	PFAM:PF00128	PFAM:PF02922	PANTHER:PTHR43002
SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	EnsemblPlantsGene:Solyc06g009220.2	EnsemblPlants:Solyc06g009220.2.1
UniParc:UPI0002766CD3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:3155576..3182364

Molecular Weight (calculated)

84660.2 Da

IEP (calculated)

6.600

GRAVY (calculated)

-0.461

Length

739 amino acids

Sequence
(BLAST)

001: MIRGPPQIVQ KCTTGIVTVN RTNIVQRTHR HDLRQLSRRD SLRLFSSDHR ILKFCTSEEA LLPRLVAAAK LQEEAPQMLD TLPSFEVSPG LTHPLGVSEI
101: ESGINFAIFS QHASAVTLCI ILPKSVHDGM IELALDPQKN RTGDIWHICI KELPRGGVLY GYRIDGPRNW HEGHRFDDSI ILIDPYAKLI EGRRAFGDES
201: NKMCRFFGTY DFNSLPFDWG ENYKLPNVPE KDLVIYEMNV RAFTADETSS LDQDQRGSYL GLIEKIPHLL ELGVNTVELL PVFEFDELEL QRRPNPRDHM
301: INTWGYSTIN FFAPMSRYAS CGGGPVRASW ELKEMVKALH GAGIEVILDV VYNHTNEADD ENPYTTSFRG IDNKVYYMVD LNNNAQLLNF SGCGNTFNCN
401: HPTVMELILE SLRHWVTEYH VDGFRFDLAS VLCRGTDGTP INAPPLVKAI SRDSVLSRCK IIAEPWDCGG LYLVGKFPNW DRWAEWNGKY RDDIRRFIKG
501: DAGMKGNFAT RIAGSADLYR VNKRKPYHSV NFVIAHDGFT LYDLVSYNNK HNDANGEGGN DGCNDNFSWN CGIEGETSDA NVNELRSRQM KNFHLALMVS
601: QGTPMMLMGD EYGHTRYGNN NSYGHDTAIN NFQWGQLEAR RNDHFRFFSK MIKFRLSHNV LRKENFIEKN DITWLEDNWY NEESRFLAFM LHDGNGGDIY
701: LAFNAHHFSI KTAIPSPPRN RSWYRVEDKV LYCLLRSDR

Best Arabidopsis Sequence Match ( AT4G09020.1 )
(BLAST)

001: MLTSPSSSST YDPFSSNFSP SLTNAFSSSF TIPMGLKLSR RVTRARIFSR KIKDRSTLKV TCRRAHERVV EEEASTMTET KLFKVSSGEV SPLGVSQVDK
101: GINFALFSQN ATSVTLCLSL SQSGKDDTDD DGMIELVLDP SVNKTGDTWH ICVEDLPLNN VLYGYRVDGP GEWQQGHRFD RSILLLDPYA KLVKGHSSFG
201: DSSQKFAQFY GTYDFESSPF DWGDDYKFPN IPEKDLVIYE MNVRAFTADE SSGMDPAIGG SYLGFIEKIP HLQDLGINAV ELLPVFEFDE LELQRRSNPR
301: DHMVNTWGYS TVNFFAPMSR YASGEGDPIK ASKEFKEMVK ALHSAGIEVI LDVVYNHTNE ADDKYPYTTS FRGIDNKVYY MLDPNNQLLN FSGCGNTLNC
401: NHPVVMELIL DSLRHWVTEY HVDGFRFDLA SVLCRATDGS PLSAPPLIRA IAKDSVLSRC KIIAEPWDCG GLYLVGKFPN WDRWAEWNGM YRDDVRRFIK
501: GDSGMKGSFA TRVSGSSDLY QVNQRKPYHG VNFVIAHDGF TLRDLVSYNF KHNEANGEGG NDGCNDNHSW NCGFEGETGD AHIKSLRTRQ MKNFHLALMI
601: SQGTPMMLMG DEYGHTRYGN NNSYGHDTSL NNFQWKELDA KKQNHFRFFS EVIKFRHSHH VLKHENFLTQ GEITWHEDNW DNSESKFLAF TLHDGIGGRD
701: IYVAFNAHDY FVKALIPQPP PGKQWFRVAD TNLESPDDFV REGVAGVADT YNVAPFSSIL LQSK

Arabidopsis Description

ISA3Isoamylase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0S5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.