CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018765	Potato	cytosol	29.35	70.74
CDX90708	Canola	plastid	90.4	66.36
Os09t0469400-01	Rice	plastid	39.86	64.9
AT4G09020.1	Thale cress	plastid	80.8	58.38
CDX77333	Canola	cytosol	9.78	51.43
GSMUA_Achr9P14980_001	Banana	cytosol	63.77	49.23
KRH53006	Soybean	plastid	67.39	48.19
VIT_18s0001g06520.t01	Wine grape	plastid	67.57	48.13
TraesCS5D01G255800.1	Wheat	plastid	66.67	47.42
TraesCS5A01G248700.1	Wheat	plastid	66.12	47.1
TraesCS5B01G246400.1	Wheat	plastid	66.12	47.04
KRH62296	Soybean	plastid	66.67	47.0
HORVU5Hr1G070160.1	Barley	plastid	65.76	46.78
KXG35819	Sorghum	plastid	65.4	46.52
Solyc06g009220.2.1	Tomato	plastid	62.14	46.41
CDY60217	Canola	extracellular	12.86	41.28
CDX74820	Canola	plastid	41.12	28.84
CDY20500	Canola	plastid	40.76	28.7
CDY15458	Canola	cytosol	32.97	24.83
CDX77349	Canola	mitochondrion	16.49	23.33
CDY05042	Canola	cytosol	11.41	22.91
CDY18165	Canola	plastid	32.43	21.88
CDX89902	Canola	plastid	32.25	21.14
CDX86680	Canola	plastid	30.98	20.65
Zm00001d005948_P001	Maize	golgi, plasma membrane, plastid	9.24	12.2
CDX70233	Canola	plastid	17.03	9.76
CDY51316	Canola	plastid	17.03	9.69
PGSC0003DMT400018766	Potato	cytosol	3.26	7.29
CDY47998	Canola	cytosol	6.16	5.23

Protein Annotations

Gene3D:2.60.40.10	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80	GO:A0A078JXJ1	UniProt:A0A078JXJ1
EnsemblPlants:CDY70211	ProteinID:CDY70211	ProteinID:CDY70211.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00097325001	InterPro:Glyco_hydro_13_N
InterPro:Glyco_hydro_13_cat_dom	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00128
PFAM:PF02922	PANTHER:PTHR43002	SMART:SM00642	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI0004EF2D16
SEG:seg	:	:	:	:	:

Description

BnaCnng67200DBnaCnng67200D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JXJ1]

Coordinates

chrLK041477:-:3..3222

Molecular Weight (calculated)

62083.4 Da

IEP (calculated)

5.264

GRAVY (calculated)

-0.330

Length

552 amino acids

Sequence
(BLAST)

001: MLASPAYSRA ASSFPPALHS SGNVFTGFIP MGKVTGAPVC TRRSTLKVTC RRARERVIEE ESSQMAETNK QSFKVSSGEK SPLGVSQVDK GINFALFSQN
101: ATSVTLCLSL PQSDEKDDVD VVELVLDPSV NKTGDTWHIF VEDLPLRNVL YGYRVDGPGE WNQGHRFDNS ILLLDPYAKL VKGRSFFGDS NQKFAQFYGT
201: YDFETSPFDW GDDYKFPNIP EKDLVIYEMN VRAFTADESS GIDPSTAGSY LGLVEKIPHL LDLGINAVEL LPVFEFDELE LQRRPNPRDH MVNTWGYSTV
301: NFFAPMSRYA SGEGDPIKAS KEFKEMVKAL HSAGIEVILD VVYNHTNEAD DKYPYTTSFR GIDNKIYYML DPNNQLLNYS GCGNTLNCNH PVVMELILDS
401: LKHWVTEYHV DGFRFDLASV LCRDTDGSPL SAPPLIRAIA KDSVLPRCKI IAEPWDCGGL YLVGKFPNWD RWAEWNGMYR DDVRRFIKGD CGMKGSFATR
501: VSGSSDLYQV NQRKPYHGVN FIIAHDGFTL RDLVTYNSKV LLIFSCNDPM EK

Best Arabidopsis Sequence Match ( AT4G09020.1 )
(BLAST)

001: MLTSPSSSST YDPFSSNFSP SLTNAFSSSF TIPMGLKLSR RVTRARIFSR KIKDRSTLKV TCRRAHERVV EEEASTMTET KLFKVSSGEV SPLGVSQVDK
101: GINFALFSQN ATSVTLCLSL SQSGKDDTDD DGMIELVLDP SVNKTGDTWH ICVEDLPLNN VLYGYRVDGP GEWQQGHRFD RSILLLDPYA KLVKGHSSFG
201: DSSQKFAQFY GTYDFESSPF DWGDDYKFPN IPEKDLVIYE MNVRAFTADE SSGMDPAIGG SYLGFIEKIP HLQDLGINAV ELLPVFEFDE LELQRRSNPR
301: DHMVNTWGYS TVNFFAPMSR YASGEGDPIK ASKEFKEMVK ALHSAGIEVI LDVVYNHTNE ADDKYPYTTS FRGIDNKVYY MLDPNNQLLN FSGCGNTLNC
401: NHPVVMELIL DSLRHWVTEY HVDGFRFDLA SVLCRATDGS PLSAPPLIRA IAKDSVLSRC KIIAEPWDCG GLYLVGKFPN WDRWAEWNGM YRDDVRRFIK
501: GDSGMKGSFA TRVSGSSDLY QVNQRKPYHG VNFVIAHDGF TLRDLVSYNF KHNEANGEGG NDGCNDNHSW NCGFEGETGD AHIKSLRTRQ MKNFHLALMI
601: SQGTPMMLMG DEYGHTRYGN NNSYGHDTSL NNFQWKELDA KKQNHFRFFS EVIKFRHSHH VLKHENFLTQ GEITWHEDNW DNSESKFLAF TLHDGIGGRD
701: IYVAFNAHDY FVKALIPQPP PGKQWFRVAD TNLESPDDFV REGVAGVADT YNVAPFSSIL LQSK

Arabidopsis Description

ISA3Isoamylase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0S5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.