CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030528.1-P	Field mustard	cytosol	89.63	89.27
CDX86680	Canola	plastid	81.45	72.1
CDX89902	Canola	plastid	76.81	66.86
CDY18165	Canola	plastid	72.58	65.04
AT1G03310.2	Thale cress	plastid	77.49	64.4
GSMUA_Achr6P16200_001	Banana	cytosol, plasma membrane, vacuole	35.61	51.28
HORVU1Hr1G062690.3	Barley	cytosol	48.98	49.93
GSMUA_Achr6P16190_001	Banana	cytosol, plasma membrane, vacuole	50.34	48.81
KRH67160	Soybean	plastid	55.93	47.34
Os05t0393700-01	Rice	cytosol, plastid	47.75	47.11
VIT_07s0104g00370.t01	Wine grape	plasma membrane, plastid, vacuole	56.48	46.94
KRG95479	Soybean	mitochondrion	55.25	46.82
TraesCS1A01G247100.1	Wheat	mitochondrion, plastid	49.52	45.78
OQU77947	Sorghum	plastid	49.66	45.5
TraesCS1B01G257700.1	Wheat	mitochondrion, plastid	48.84	45.43
TraesCS1D01G246300.1	Wheat	plastid	48.7	45.25
Solyc09g064800.1.1	Tomato	plastid	52.25	44.23
PGSC0003DMT400002502	Potato	plastid	52.8	44.08
Zm00001d038121_P001	Maize	plastid	49.66	41.41
CDY70211	Canola	plastid	24.83	32.97
CDX77333	Canola	cytosol	4.64	32.38
CDX90708	Canola	plastid	31.65	30.85
CDY60217	Canola	extracellular	6.82	29.07
CDY20500	Canola	plastid	28.79	26.91
CDY05042	Canola	cytosol	10.1	26.91
CDX74820	Canola	plastid	28.79	26.81
CDX77349	Canola	mitochondrion	13.51	25.38
CDY51316	Canola	plastid	11.6	8.76
CDX70233	Canola	plastid	11.46	8.72
CDY47998	Canola	cytosol	5.32	6.0

Protein Annotations

Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80	GO:A0A078FT31
UniProt:A0A078FT31	EnsemblPlants:CDY15458	ProteinID:CDY15458	ProteinID:CDY15458.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00089626001
InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00128	PFAM:PF02922	PANTHER:PTHR43002	PANTHER:PTHR43002:SF2
SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI0004EDBAB0	SEG:seg

Description

BnaA08g27420DBnaA08g27420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT31]

Coordinates

chrLK032055:+:115806..118007

Molecular Weight (calculated)

82609.4 Da

IEP (calculated)

5.082

GRAVY (calculated)

-0.313

Length

733 amino acids

Sequence
(BLAST)

001: MVYVSSLEPN GADNKSSLVM VWGVYRSDSS CFLPLDFENS DQDSQTPFLK RSLSESMLEL EFDGKESPFY LSFRLKLVSA NDLEMLTHRD TNFCAPVGFT
101: AGHPLPLGLS SGPDGGGSWN FAFFSRNSKS LVLCLYDDST TDRPALELDL DPYVNRTGDV WHASVDKTWG FVRYGYRCKE STNSEDDEAE SIVLDPYARV
201: IEKTISPKFL GSISKNSSFD WGRDVSPNIP LEKLIVYRFN VKGFTQHKSS KLPTNVAGTF SGVAEKVNHL KALGTNAVLL EPIFSFSEQK GPYFPFHFFS
301: PMDIYGHESA VNSMKGMVKR LHSEGIEVLL EVVFTHTAES GALQGIDDSS YYYNGKDSKS YLNCNYPVVQ QLILESLRYW VTEFHVDGFC FINASSLLRG
401: VHGEQLSRPP LVEAISFDPQ LARTKLIADC WDPHDMKMPK EVLFPHWKRW AELNTRYCRD VRNFVRGRGI LSDLATRVCG SGDIFTDGRG PAFSFNYISR
501: NSGLSLVDLV SFSGPELASE LSWNCGEEGE TNKSAVLQTR LKQIRNFLFI QYISVGIPVL NMGDECGVST KGSPLLESKK PFDWNMLASG FGAQITQFIS
601: FMTSVRARRS DVFQRSKFLR PENIVWYAND QTTPNWEDTD SRFLALRIRA ESEEETTEPK NNDMFVGFNA SDHPEKVTLP TLPEGRSKWR RLVDTSLPFP
701: GFFSVEGETV VTEDELVVYE MKPYSCTLFE TTA

Best Arabidopsis Sequence Match ( AT1G03310.2 )
(BLAST)

001: MAAWSPSVGI GSCCLNNGIT RTWKFPSARL FTGRKNKIKL GSETLMFTRK RFMGDLVTSA LQSYQFSKIC ASKTSIELRE ALSSRRAEAD DLKKVTSYSF
101: RTKAGALVKV KVEKKREKYS ILVYVSSLEL SGDDKSRLVM VWGVYRSDSS CFLPLDFENS SQDSQTHTTE TTFVKSSLSE LMLGLEFDGK ESPFYLSFHL
201: KLVSGRDPDG QEMLTHRDTD FCIPVGFTAG HPLPLGLSSG PDDDSWNFSF FSRSSTNVVL CLYDDSTTDK PALELDLDPY VNRTGDVWHA SVDNTWDFVR
301: YGYRCKETAH SKEDVDVEGE PIVLDPYATV VGKSVSQKYL GSLSKSPSFD WGEDVSPNIP LEKLLVYRLN VKGFTQHRSS KLPSNVAGTF SGVAEKVSHL
401: KTLGTNAVLL EPIFSFSEQK GPYFPFHFFS PMDIYGPSNS LESAVNSMKV MVKKLHSEGI EVLLEVVFTH TADSGALRGI DDSSYYYKGR ANDLDSKSYL
501: NCNYPVVQQL VLESLRYWVT EFHVDGFCFI NASSLLRGVH GEQLSRPPLV EAIAFDPLLA ETKLIADCWD PLEMMPKEVR FPHWKRWAEL NTRYCRNVRN
601: FLRGRGVLSD LATRICGSGD VFTDGRGPAF SFNYISRNSG LSLVDIVSFS GPELASELSW NCGEEGATNK SAVLQRRLKQ IRNFLFIQYI SLGVPVLNMG
701: DECGISTRGS PLLESRKPFD WNLLASAFGT QITQFISFMT SVRARRSDVF QRRDFLKPEN IVWYANDQTT PKWEDPASKF LALEIKSESE EEETASLAEP
801: NEPKSNDLFI GFNASDHPES VVLPSLPDGS KWRRLVDTAL PFPGFFSVEG ETVVAEEPLQ QLVVYEMKPY SCTLFETINT TA

Arabidopsis Description

ISA2ISA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WGA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.