Factsheet for Zm00001d038121_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, vacuole
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77947	Sorghum	plastid	78.84	86.62
HORVU1Hr1G062690.3	Barley	cytosol	61.32	74.97
Os05t0393700-01	Rice	cytosol, plastid	63.25	74.83
TraesCS1A01G247100.1	Wheat	mitochondrion, plastid	63.03	69.86
TraesCS1B01G257700.1	Wheat	mitochondrion, plastid	62.34	69.54
TraesCS1D01G246300.1	Wheat	plastid	61.55	68.57
GSMUA_Achr6P16200_001	Banana	cytosol, plasma membrane, vacuole	31.29	54.03
GSMUA_Achr6P16190_001	Banana	cytosol, plasma membrane, vacuole	43.57	50.66
Bra030528.1-P	Field mustard	cytosol	42.21	50.41
CDY15458	Canola	cytosol	41.41	49.66
KRG95479	Soybean	mitochondrion	43.23	43.93
CDY18165	Canola	plastid	40.84	43.89
CDX89902	Canola	plastid	41.98	43.82
VIT_07s0104g00370.t01	Wine grape	plasma membrane, plastid, vacuole	43.91	43.76
KRH67160	Soybean	plastid	42.89	43.53
Solyc09g064800.1.1	Tomato	plastid	42.55	43.19
Bra033388.1-P	Field mustard	plastid	41.64	43.16
PGSC0003DMT400002502	Potato	plastid	43.0	43.05
AT1G03310.2	Thale cress	plastid	42.09	41.95
CDX86680	Canola	plastid	39.14	41.55
Zm00001d005949_P001	Maize	cytosol, mitochondrion, vacuole	11.04	34.77
Zm00001d020799_P003	Maize	mitochondrion	27.19	29.8
Zm00001d050508_P001	Maize	cytosol	2.62	29.11
Zm00001d049753_P001	Maize	mitochondrion, plastid	23.09	24.34
Zm00001d052844_P001	Maize	cytosol	2.96	15.2
Zm00001d005948_P001	Maize	golgi, plasma membrane, plastid	6.37	13.4
Zm00001d050532_P001	Maize	extracellular	5.57	12.07
Zm00001d016045_P001	Maize	plastid	4.78	11.38
Zm00001d004438_P005	Maize	plastid	10.81	9.8
Zm00001d024985_P004	Maize	plastid	2.16	8.44

Protein Annotations

Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80	UniProt:A0A1D6M3H8
ProteinID:AQK85712.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005977	GO:GO:0005983	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0010021	GO:GO:0016787	GO:GO:0019156	GO:GO:0043033	InterPro:Glyco_hydro_13_N
InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	PFAM:PF00128	PFAM:PF02922	PANTHER:PTHR43002	PANTHER:PTHR43002:SF2	SMART:SM00642
SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI000844EEFF	EnsemblPlantsGene:Zm00001d038121	EnsemblPlants:Zm00001d038121_P001
EnsemblPlants:Zm00001d038121_T001	SEG:seg	:	:	:	:

Description

sugary4 sugary4

Coordinates

chr6:-:148612409..148616179

Molecular Weight (calculated)

95469.0 Da

IEP (calculated)

5.065

GRAVY (calculated)

-0.108

Length

879 amino acids

Sequence
(BLAST)

001: MASSLPAPPA SPSSSWRGLT PRCPPPRCGP LLARAVARSY RYRFRTDDDG VVDVAVAGKD GDAGYVVAIE APTHGQRGGL VLRPAGSGEG VPLAPAAPGG
101: ALVAELSYDV ARAPFHVSFT LADAMGAEIR THRGTSFRVP VGVGRGCPSP LGLSQSKDGA ANFAVYSKIA KGMVLCLFGG GGGDGPALEI ELDPYVHRTG
201: DVWHVSMESV EGYARYGFRS GLFAMFGIDR PLLDPYAKVI GDFVAGDSVD EDGLAVPSIR CLASLKNAPN YDWGRDKHPC LPLEKLVVYR ANVALFTKDR
301: SSRLADNAAG TFSGMSAKVE HFRHLGVNAV LLEPVFPFHQ VKGPYFPYHF FSPMSLYSSE CSSVSAIKSM KDMVKTMHRN GIEVLLEVVF THTAEGGAEC
401: QMISLRGIDG SSYYIADGIA GCKASVLNCN HPVTQKLILD SLRHWVLDFH VDGFCFINAP FLVRGPRGEG LSRPPLLEAI AFDPVLSKTK IIADPWSPLD
501: ISNVQFPFPH WKRWAEMNTR FSMDVRKFLK GEALISDLAT RLCGSGDLFS SRAPAFSFNY VSRNSGLTLV DLVSFSSDEL ASEFSWNCGE EGPSENNAVL
601: QTRLRQIRNF LFILFISLGI PVLNMGDECG NSAAGSTSYK DRGPLNWKAL KTAFVKEVTG FISFLSALRS RRADIFQRCE FLKLENIHWY GSDLSEPCWE
701: DPTSNFLCLH INAELDEKLP DSTGGDLYIC FNANEESASA TLPAIAEGSM WLRLVDTSLA FPGFFSRGSS HETHQMDATD DGAAAAAAEA ARRPFTALSQ
801: EEADLALARV LQEQERAYML LRMNGGGGEG SNYGSSDEGS YEYDEEGEED YEEELELSLV SAIVSTYDSL PPTPAQFTI

Best Arabidopsis Sequence Match ( AT1G03310.2 )
(BLAST)

001: MAAWSPSVGI GSCCLNNGIT RTWKFPSARL FTGRKNKIKL GSETLMFTRK RFMGDLVTSA LQSYQFSKIC ASKTSIELRE ALSSRRAEAD DLKKVTSYSF
101: RTKAGALVKV KVEKKREKYS ILVYVSSLEL SGDDKSRLVM VWGVYRSDSS CFLPLDFENS SQDSQTHTTE TTFVKSSLSE LMLGLEFDGK ESPFYLSFHL
201: KLVSGRDPDG QEMLTHRDTD FCIPVGFTAG HPLPLGLSSG PDDDSWNFSF FSRSSTNVVL CLYDDSTTDK PALELDLDPY VNRTGDVWHA SVDNTWDFVR
301: YGYRCKETAH SKEDVDVEGE PIVLDPYATV VGKSVSQKYL GSLSKSPSFD WGEDVSPNIP LEKLLVYRLN VKGFTQHRSS KLPSNVAGTF SGVAEKVSHL
401: KTLGTNAVLL EPIFSFSEQK GPYFPFHFFS PMDIYGPSNS LESAVNSMKV MVKKLHSEGI EVLLEVVFTH TADSGALRGI DDSSYYYKGR ANDLDSKSYL
501: NCNYPVVQQL VLESLRYWVT EFHVDGFCFI NASSLLRGVH GEQLSRPPLV EAIAFDPLLA ETKLIADCWD PLEMMPKEVR FPHWKRWAEL NTRYCRNVRN
601: FLRGRGVLSD LATRICGSGD VFTDGRGPAF SFNYISRNSG LSLVDIVSFS GPELASELSW NCGEEGATNK SAVLQRRLKQ IRNFLFIQYI SLGVPVLNMG
701: DECGISTRGS PLLESRKPFD WNLLASAFGT QITQFISFMT SVRARRSDVF QRRDFLKPEN IVWYANDQTT PKWEDPASKF LALEIKSESE EEETASLAEP
801: NEPKSNDLFI GFNASDHPES VVLPSLPDGS KWRRLVDTAL PFPGFFSVEG ETVVAEEPLQ QLVVYEMKPY SCTLFETINT TA

Arabidopsis Description

ISA2ISA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WGA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.