Factsheet for GSMUA_Achr6P16200_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

nucleus 1
vacuole 1
extracellular 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P16190_001	Banana	cytosol, plasma membrane, vacuole	81.34	54.76
HORVU1Hr1G062690.3	Barley	cytosol	54.03	38.25
Os05t0393700-01	Rice	cytosol, plastid	53.05	36.34
TraesCS1D01G246300.1	Wheat	plastid	55.8	35.99
TraesCS1A01G247100.1	Wheat	mitochondrion, plastid	55.8	35.81
CDY15458	Canola	cytosol	51.28	35.61
Bra030528.1-P	Field mustard	cytosol	51.28	35.46
TraesCS1B01G257700.1	Wheat	mitochondrion, plastid	54.62	35.28
OQU77947	Sorghum	plastid	55.4	35.25
VIT_07s0104g00370.t01	Wine grape	plasma membrane, plastid, vacuole	56.19	32.43
KRG95479	Soybean	mitochondrion	54.62	32.14
KRH67160	Soybean	plastid	54.03	31.76
CDY18165	Canola	plastid	50.69	31.54
Zm00001d038121_P001	Maize	plastid	54.03	31.29
CDX89902	Canola	plastid	51.67	31.24
Bra033388.1-P	Field mustard	plastid	51.28	30.78
PGSC0003DMT400002502	Potato	plastid	52.26	30.3
Solyc09g064800.1.1	Tomato	plastid	51.28	30.14
CDX86680	Canola	plastid	48.92	30.07
AT1G03310.2	Thale cress	plastid	51.67	29.82
GSMUA_Achr9P14980_001	Banana	cytosol	27.7	19.72
GSMUA_Achr9P14010_001	Banana	plastid	7.66	17.26
GSMUA_Achr9P14020_001	Banana	plasma membrane, vacuole	22.99	16.76

Protein Annotations

Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G16200_001
EnsemblPlants:GSMUA_Achr6P16200_001	EnsemblPlants:GSMUA_Achr6T16200_001	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:M0T7G8	PFAM:PF02922	PANTHER:PTHR43002
PANTHER:PTHR43002:SF2	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI0002969A2E	:

Description

Isoamylase 2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G16200_001]

Coordinates

chr6:+:10791639..10793756

Molecular Weight (calculated)

56691.4 Da

IEP (calculated)

4.746

GRAVY (calculated)

-0.071

Length

509 amino acids

Sequence
(BLAST)

001: MPFVCNYSGR YTLDLDFDSA KAPFYLSFML HLCSDAGVVA SEIKTHRKTR FCVPVGFGPG YPASLGASVS DDGMVNFSLF LRNAESVFLC LYEGKTEVPS
101: LEIELDPYVN RTGDIWHVSM ESIVDYVSYG YRPYFPYHFF SLMDEYGREH NAASAINSLK GMIKTLHSEC IEVLMEVVFT QGQNGDHLSR PPLVEAIAFD
201: PVLSRTKIVA DCWSPLDMSY MEIQFPHWKA WAEMNMRFCS DAKNFLRGEG LLSDLATRLC GSGDLFSSAG PAFSFNFVAK NFGLPLVDLV KFSTAELASE
301: LSWNCGDEGP TNNNTVLETR LKQIRNFLFV LFVSLGVPVL NMGDECGYST GGSPLYDDRK PINWDSLGTG FSKQITKFIA YLGSLRIPRG DIFQSKHFLK
401: VENIVLFGSN QSEPKWDDPT CKFLALALKS EKNFDMLNSN GGDLFICFNA SNNLETVVLP EPTEGNVWLR LVDTSLALPG FFSNSYDPNG QKAEGSSSYE
501: LKPQSGVLF

Best Arabidopsis Sequence Match ( AT1G03310.2 )
(BLAST)

001: MAAWSPSVGI GSCCLNNGIT RTWKFPSARL FTGRKNKIKL GSETLMFTRK RFMGDLVTSA LQSYQFSKIC ASKTSIELRE ALSSRRAEAD DLKKVTSYSF
101: RTKAGALVKV KVEKKREKYS ILVYVSSLEL SGDDKSRLVM VWGVYRSDSS CFLPLDFENS SQDSQTHTTE TTFVKSSLSE LMLGLEFDGK ESPFYLSFHL
201: KLVSGRDPDG QEMLTHRDTD FCIPVGFTAG HPLPLGLSSG PDDDSWNFSF FSRSSTNVVL CLYDDSTTDK PALELDLDPY VNRTGDVWHA SVDNTWDFVR
301: YGYRCKETAH SKEDVDVEGE PIVLDPYATV VGKSVSQKYL GSLSKSPSFD WGEDVSPNIP LEKLLVYRLN VKGFTQHRSS KLPSNVAGTF SGVAEKVSHL
401: KTLGTNAVLL EPIFSFSEQK GPYFPFHFFS PMDIYGPSNS LESAVNSMKV MVKKLHSEGI EVLLEVVFTH TADSGALRGI DDSSYYYKGR ANDLDSKSYL
501: NCNYPVVQQL VLESLRYWVT EFHVDGFCFI NASSLLRGVH GEQLSRPPLV EAIAFDPLLA ETKLIADCWD PLEMMPKEVR FPHWKRWAEL NTRYCRNVRN
601: FLRGRGVLSD LATRICGSGD VFTDGRGPAF SFNYISRNSG LSLVDIVSFS GPELASELSW NCGEEGATNK SAVLQRRLKQ IRNFLFIQYI SLGVPVLNMG
701: DECGISTRGS PLLESRKPFD WNLLASAFGT QITQFISFMT SVRARRSDVF QRRDFLKPEN IVWYANDQTT PKWEDPASKF LALEIKSESE EEETASLAEP
801: NEPKSNDLFI GFNASDHPES VVLPSLPDGS KWRRLVDTAL PFPGFFSVEG ETVVAEEPLQ QLVVYEMKPY SCTLFETINT TA

Arabidopsis Description

ISA2ISA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WGA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.