Factsheet for GSMUA_Achr9P14980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018765	Potato	cytosol	22.94	71.62
CDY05042	Canola	cytosol	26.71	69.45
HORVU5Hr1G070160.1	Barley	plastid	75.24	69.33
KXG35819	Sorghum	plastid	73.85	68.04
TraesCS5B01G246400.1	Wheat	plastid	73.85	68.04
TraesCS5D01G255800.1	Wheat	plastid	73.71	67.91
TraesCS5A01G248700.1	Wheat	plastid	73.43	67.74
VIT_18s0001g06520.t01	Wine grape	plastid	73.29	67.61
Os09t0469400-01	Rice	plastid	32.03	67.55
KRH53006	Soybean	plastid	72.03	66.71
AT4G09020.1	Thale cress	plastid	71.19	66.62
CDX90708	Canola	plastid	69.65	66.22
KRH62296	Soybean	plastid	72.31	66.03
Bra000667.1-P	Field mustard	plastid	66.29	65.83
Solyc06g009220.2.1	Tomato	plastid	67.97	65.76
CDY70211	Canola	plastid	49.23	63.77
CDX77333	Canola	cytosol	8.53	58.1
PGSC0003DMT400018766	Potato	cytosol	19.86	57.49
Bra014108.1-P	Field mustard	cytosol	16.5	57.0
CDX77349	Canola	mitochondrion	30.91	56.67
Bra014111.1-P	Field mustard	mitochondrion	11.05	55.24
CDY60217	Canola	extracellular	10.77	44.77
GSMUA_Achr9P14020_001	Banana	plasma membrane, vacuole	38.6	39.54
GSMUA_Achr6P16190_001	Banana	cytosol, plasma membrane, vacuole	30.91	29.23
GSMUA_Achr6P16200_001	Banana	cytosol, plasma membrane, vacuole	19.72	27.7
GSMUA_Achr9P14010_001	Banana	plastid	8.25	26.11
Zm00001d005948_P001	Maize	golgi, plasma membrane, plastid	14.55	24.88

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80
InterPro:A-amylase/branching_C	GO:GO:0003674	GO:GO:0003824	GO:GO:0004133	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0005980	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0043169	EnsemblPlantsGene:GSMUA_Achr9G14980_001	EnsemblPlants:GSMUA_Achr9P14980_001	EnsemblPlants:GSMUA_Achr9T14980_001
InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycogen_debranch_GlgX	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:M0U0F6	PFAM:PF00128	PFAM:PF02806
PFAM:PF02922	PANTHER:PTHR43002	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296
TIGRFAMs:TIGR02100	UniParc:UPI00029490FC	:	:	:	:

Description

Isoamylase 3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G14980_001]

Coordinates

chr9:+:9801408..9831593

Molecular Weight (calculated)

80989.5 Da

IEP (calculated)

5.956

GRAVY (calculated)

-0.437

Length

715 amino acids

Sequence
(BLAST)

001: MVKPGNVFGH SVEESLVEEK VTPMLGTDVP LKYSPGMAFP LGASEAENGI NFAIFSRHAS CVTLCLSNFG REKSQEICDG MVEIALDPEK NKTGDVWHIC
101: VEGLSRSGIL YGYRIDGPQK REQGHGFDNS IVLLDPYAKL VSGRKWFGDV ANKMSKFLGT YDFESMPFDW GPDYKLPNIP ETDLVIYEMN VRAFTADESS
201: ELDPEVRGSY LGVIEKIPHL LELGINAVEL LPVFEFDELE FQRYPNPRDH MINTWGYSTL NFFAPMSRYA SAGGGPLVAS HEFKQMVKAL HNAGIEVILD
301: VVYNHTNEAN DRHPYTSSFR GVDNKVYYML DPDNGAKYLN FSGCGNTLNC NHPVVMELIL DSLRHWVNEY HVDGFRFDLA SILCRGTDGS PLNSPPLAKA
401: IAKDAVLSRC KIIAEPWDCG GLYLVGNFPN WDRWAEWNGK YRDDIRRFMK GDCGMKGTFA TRISGSADLY QVNKRKPYHS INFVIAHDGF TLCDLVSYNF
501: KHNDANGEGG KDGSNDNFSW NCGVEGETDD VDIIGLRSRQ MKNFHLALMI SQGTPMMLMG DEYGHTRYGN NNSYGHDTSI NHFQWKQLEE RRGGHFRFFC
601: EMIKFRCKHP MLRQDRFLTK NDVAWHEDNW SNQESKFLAF TLHDDQFGGD IYLAFNAHDY YVKAAVPSPP HKKRWHRVVD TNLESPKDFV PEGVPFSNTS
701: YNVASYSAVL LEAKP

Best Arabidopsis Sequence Match ( AT4G09020.1 )
(BLAST)

001: MLTSPSSSST YDPFSSNFSP SLTNAFSSSF TIPMGLKLSR RVTRARIFSR KIKDRSTLKV TCRRAHERVV EEEASTMTET KLFKVSSGEV SPLGVSQVDK
101: GINFALFSQN ATSVTLCLSL SQSGKDDTDD DGMIELVLDP SVNKTGDTWH ICVEDLPLNN VLYGYRVDGP GEWQQGHRFD RSILLLDPYA KLVKGHSSFG
201: DSSQKFAQFY GTYDFESSPF DWGDDYKFPN IPEKDLVIYE MNVRAFTADE SSGMDPAIGG SYLGFIEKIP HLQDLGINAV ELLPVFEFDE LELQRRSNPR
301: DHMVNTWGYS TVNFFAPMSR YASGEGDPIK ASKEFKEMVK ALHSAGIEVI LDVVYNHTNE ADDKYPYTTS FRGIDNKVYY MLDPNNQLLN FSGCGNTLNC
401: NHPVVMELIL DSLRHWVTEY HVDGFRFDLA SVLCRATDGS PLSAPPLIRA IAKDSVLSRC KIIAEPWDCG GLYLVGKFPN WDRWAEWNGM YRDDVRRFIK
501: GDSGMKGSFA TRVSGSSDLY QVNQRKPYHG VNFVIAHDGF TLRDLVSYNF KHNEANGEGG NDGCNDNHSW NCGFEGETGD AHIKSLRTRQ MKNFHLALMI
601: SQGTPMMLMG DEYGHTRYGN NNSYGHDTSL NNFQWKELDA KKQNHFRFFS EVIKFRHSHH VLKHENFLTQ GEITWHEDNW DNSESKFLAF TLHDGIGGRD
701: IYVAFNAHDY FVKALIPQPP PGKQWFRVAD TNLESPDDFV REGVAGVADT YNVAPFSSIL LQSK

Arabidopsis Description

ISA3Isoamylase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0S5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.